Glyma18g46370 - SoyBase

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Report for Sequence Feature Glyma18g46370

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56131412
stop:	56133246
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59810	AT	Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein \| chr3:22096841-22097666 FORWARD LENGTH=91	SoyBase	E_val: 1.00E-53	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005732	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1783	KOG	Small nuclear ribonucleoprotein F	JGI		ISS
PTHR11021	Panther	SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F)	JGI		ISS
PF01423	PFAM	LSM domain	JGI		ISS
UniRef100_G7JCP5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U6 snRNA-associated Sm-like protein LSm6 n=1 Tax=Medicago truncatula RepID=G7JCP5_MEDTR	SoyBase	E_val: 4.00E-59	ISS
UniRef100_I1L6N0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6N0_SOYBN	SoyBase	E_val: 2.00E-59	ISS

Expression Patterns of Glyma18g46370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46370

Paralog	Evidence	Comments
Glyma09g39830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g229600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46370

Limit To All Plant Sequences

>Glyma18g46370.2   sequence type=transcript   gene model=Glyma18g46370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTATTTTGCATTTTTTTCACCCCACAAAGTGTTTGTGAAAATGCTGCTGTGAGGAGGAAACTTGGACACCATACCTGTGTATGTTTAATTAACCAAAGTTATTTTGTTGTTCCTTTGAAGGTGTTTGAAGTTGAGATAAAAATGAGCGGAACAGAGAAAGCAGGATCAGGAACCACCAAAACCCCCGCCGATTTCCTCAAATCCATTCGTGGGAGGCCGGTTGTCGTCAAGCTCAATTCTGGTGTTGATTACAGAGGTATACTTGCTTGTCTAGATGGCTATATGAATATTGCAATGGAGCAGACAGAGGAGTACGTCAATGGACAACTGAAGAACAAGTATGGTGACGCTTTCATCCGAGGGAATAATGTTCTATACATCAGTACCTCAAAGAGGACTCTAGCAGAGGGGGCTTAGAAAGTATAGGAATCTGATATTTTTTTTAATGTTTGGAAGACGCTTATAGTTTTGAAAGGCTTATTGGACTGCCCTGCCTTTATGTTTCAACTCTCGCCTATTGTAACTTATTTGCCCTGGTTATATTTTTAAGGTAAAACGGTATGACCAGTTTGTAAAATGCTCGTTGACATATTTTAGTAGAATATTTTAGCCTGTTTTGAAAATTCAAAACAAATAGAAACTGCCATTACTTTAAGGACTGTTTGGTTCAAAGGACGGGAGAGAT

Coding sequences of Glyma18g46370

Limit To All Plant Sequences

>Glyma18g46370.1   sequence type=CDS   gene model=Glyma18g46370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAACAGAGAAAGCAGGATCAGGAACCACCAAAACCCCCGCCGATTTCCTCAAATCCATTCGTGGGAGGCCGGTTGTCGTCAAGCTCAATTCTGGTGTTGATTACAGAGGTATACTTGCTTGTCTAGATGGCTATATGAATATTGCAATGGAGCAGACAGAGGAGTACGTCAATGGACAACTGAAGAACAAGTATGGTGACGCTTTCATCCGAGGGAATAATGTTCTATACATCAGTACCTCAAAGAGGACTCTAGCAGAGGGGGCTTAG

>Glyma18g46370.2   sequence type=CDS   gene model=Glyma18g46370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAACAGAGAAAGCAGGATCAGGAACCACCAAAACCCCCGCCGATTTCCTCAAATCCATTCGTGGGAGGCCGGTTGTCGTCAAGCTCAATTCTGGTGTTGATTACAGAGGTATACTTGCTTGTCTAGATGGCTATATGAATATTGCAATGGAGCAGACAGAGGAGTACGTCAATGGACAACTGAAGAACAAGTATGGTGACGCTTTCATCCGAGGGAATAATGTTCTATACATCAGTACCTCAAAGAGGACTCTAGCAGAGGGGGCTTAG

Predicted protein sequences of Glyma18g46370

Limit To All Plant Sequences

>Glyma18g46370.1   sequence type=predicted peptide   gene model=Glyma18g46370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGTEKAGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*

>Glyma18g46370.2   sequence type=predicted peptide   gene model=Glyma18g46370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGTEKAGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*

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