Glyma18g46340 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g46340

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56106847
stop:	56115047
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00570	AT	Annotation by Michelle Graham. TAIR10: NAD-dependent malic enzyme 2 \| chr4:242817-246522 REVERSE LENGTH=607	SoyBase	E_val: 0	ISS
GO:0006108	GO-bp	Annotation by Michelle Graham. GO Biological Process: malate metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004470	GO-mf	Annotation by Michelle Graham. GO Molecular Function: malic enzyme activity	SoyBase	N/A	ISS
GO:0004471	GO-mf	Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase (decarboxylating) activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016652	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG1257	KOG	NADP+-dependent malic enzyme	JGI		ISS
PTHR23406	Panther	MALIC ENZYME-RELATED	JGI		ISS
PTHR23406:SF2	Panther	MALIC ENZYME	JGI		ISS
PF00390	PFAM	Malic enzyme, N-terminal domain	JGI		ISS
PF03949	PFAM	Malic enzyme, NAD binding domain	JGI		ISS
UniRef100_I1N3M2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Malic enzyme n=1 Tax=Glycine max RepID=I1N3M2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0001CABDD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001CABDD5 related cluster n=1 Tax=unknown RepID=UPI0001CABDD5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46340

Paralog	Evidence	Comments
Glyma09g39870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g229300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46340

Limit To All Plant Sequences

>Glyma18g46340.1   sequence type=CDS   gene model=Glyma18g46340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGGTTGTGCGATTCGCGGCGGCCAGATCGCGGCGGTTCTCGACGGCGATTCCCGGTCCATGCAAGGTTCACAAGCGTGGCACTGATATCCTCCACGACCCTTGGTTCAACAAGGATACTGGGTTTCCTTTAACTGAAAGGGATCGATTGGGGCTTCGGGGCCTGCTTCCTCCTCGTGTCATTTCGTTTGAGCATCAATATGATCGGTTTATGAATTCATATAGATCTTTGGAGAAGAATACACAGGGCCAATCAGATAGATTTGTTTCTTTATCCAAATGGAGGATCTTAAATAGATTGCATGACAGGAATGAGACTCTATATTACAGAGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGGTTAGTGTGTGAAAATTATTCCGGGTTATTTAGACGCCCGCGTGGAATGTATTTTAGTGCGAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCATCTGATCAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGCTTGGGTGACCTTGGAGTTCAGGGCATTGGAATACCTATAGGAAAACTTGACATGTATGTTGCTGCTGCTGGTATCAACCCTCAAAAAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTTGAGGATCCCCTTTATTTAGGAGTTCGGCAACCTAGGTTGGAAGGTGAAGAGTATCTATTGATTGTGGATGAATTCATGGAAGCTGTACACGCTCGATGGCCAAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACGGCTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTCAGCATGGCTGTCCAGGCTGTTTCAAGGATGTCAGGGGGCAGTGGAACAGATGCCAACAGTCAATTTTTTTTAATTGATAAAGATGGACTTGTCACGACAGAAAGGAGCAATCTAGATCCAGCTGCAGTTCCATTTGCCAAAAATCCAAGAGATCTTGAAGGGCTTTCAGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTTGGATTGTCTGGAGTTGGTGGTGTTTTCAACACTGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCAATGTCTAATCCCACCATGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCAGGAGAAAATATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCATCCATTGACTGTATACGAGATGTTACAGCAGAGGTTGGGGCTGCTGTTGTATGTGCAGCAGTTGCAGAAAAGCAGGCTGAAGGACATGGTGATGTAGGGTTCAAAGAGCTAGAGAACATGTCAAAAGAAGAAACTGTGGAGTATGTCAGAGGCAATATGTGGTACCCTGAGTATTGCCCTCTTGTTCATGAAAAATGA

Predicted protein sequences of Glyma18g46340

Limit To All Plant Sequences

>Glyma18g46340.1   sequence type=predicted peptide   gene model=Glyma18g46340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKVVRFAAARSRRFSTAIPGPCKVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYDRFMNSYRSLEKNTQGQSDRFVSLSKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCENYSGLFRRPRGMYFSAKDKGEMMSMIYNWPSDQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQKILPVMLDVGTNNQKLLEDPLYLGVRQPRLEGEEYLLIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRERFCMFNDDIQGTAGVALAGLLGTVRSQGQPLSDFLKQKIVVVGAGSAGLGVLSMAVQAVSRMSGGSGTDANSQFFLIDKDGLVTTERSNLDPAAVPFAKNPRDLEGLSEGASIIEVVKKVKPHVLLGLSGVGGVFNTEVLKAMRESVSTKPAIFAMSNPTMNAECTAIEAFSHAGENIVFASGSPFENVDLGNGEVGHVNQANNMYLFPGIGLGTLLSGARHITDGMLRAAAECLASYMTEDDVRKGILYPSIDCIRDVTAEVGAAVVCAAVAEKQAEGHGDVGFKELENMSKEETVEYVRGNMWYPEYCPLVHEK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain