Glyma18g46280 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g46280

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56037037
stop:	56039623
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62150	AT	Annotation by Michelle Graham. TAIR10: peptidoglycan-binding LysM domain-containing protein \| chr5:24958325-24958633 FORWARD LENGTH=102	SoyBase	E_val: 2.00E-33	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0016998	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule catabolic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B6TQ19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LysM domain containing protein n=1 Tax=Zea mays RepID=B6TQ19_MAIZE	SoyBase	E_val: 3.00E-32	ISS
UniRef100_I1N3L6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3L6_SOYBN	SoyBase	E_val: 4.00E-74	ISS

Expression Patterns of Glyma18g46280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46280

Paralog	Evidence	Comments
Glyma09g39930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g228600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46280

Limit To All Plant Sequences

>Glyma18g46280.2   sequence type=CDS   gene model=Glyma18g46280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGACAACCACATTTGCAGCACCACTTTGTGTCTTTTATACGACCTCAACTCACTCTCCCTCACTCCATATCCAAATCTTCCTCTCCCACACGTACTCTCTCAAAGTGATGGCTTTCAATTCCAAAAGGGCACCAATATCAAGTTCAAAAGCCCTAGCTGATGCAGCTTCATGGTGCTGTGCATGTCTTCTTGTGTCTCTTCTATTGCTATGCATATTCAGAGACAGTTCTGCCCTTCATGATGATCAAGGGAACTTGATGATCAGAAGCAGCCATGTCTTGTCCAAGCCATGTGATGAAATATATGTGGTTGGAGAAGGAGAGACACTTCACACAATCAGTGACAAGTGCGGTGACCCCTTTATTGTGGAAAAGAACCCTCACATCCATGACCCTGATGATGTCTTCCCGGGCCTTGTTATCAAGATTACACCCTCATAA

Predicted protein sequences of Glyma18g46280

Limit To All Plant Sequences

>Glyma18g46280.2   sequence type=predicted peptide   gene model=Glyma18g46280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTTTFAAPLCVFYTTSTHSPSLHIQIFLSHTYSLKVMAFNSKRAPISSSKALADAASWCCACLLVSLLLLCIFRDSSALHDDQGNLMIRSSHVLSKPCDEIYVVGEGETLHTISDKCGDPFIVEKNPHIHDPDDVFPGLVIKITPS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain