Glyma18g46260 - SoyBase

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Report for Sequence Feature Glyma18g46260

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56020405
stop:	56028003
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35730	AT	Annotation by Michelle Graham. TAIR10: EXS (ERD1/XPR1/SYG1) family protein \| chr5:13893941-13896821 FORWARD LENGTH=457	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR10783	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR	JGI		ISS
PTHR10783:SF9	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR-RELATED	JGI		ISS
PF03124	PFAM	EXS family	JGI		ISS
UniRef100_G7L2J7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SPX and EXS domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L2J7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N3L3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3L3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46260

Paralog	Evidence	Comments
Glyma09g39960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g228400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46260

Limit To All Plant Sequences

>Glyma18g46260.2   sequence type=transcript   gene model=Glyma18g46260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGGGGATGTTGGGCTCTTTGAATGATGGAATCACACTGATAGGTCCTATAATACAATAATACTAATACAATGAAGAATATAATTTCACCTGTGCAAAGTGCTATGCCATCTCCAACATTTCTGTGGAGGTTCAAGGTGACACTCTTTCTTATATGGGGCCTTACTTGCTGCAAGATTGGTTGGGATTCTGTCATGAGAATGGATGCAAATTTGCGAGATCTGTTTTTATACGAGGTGTTTTTGTATTACAACCCTCTCCTTCTTGTGACTATGATGGTTTGGCTTTGGGGAGCAAATTTGTGGGTATTTCTACAATCAACTGTAAGCTATGCCAAGGTTTTTGATCTTGATCAAAACCACCTTAGTCACAAAGAGACATGGAAGTGTAGCACTTGGATGACAATCATTGTCCCTACTAGCATGACTGCTTACCTCTATCTCTATTCTCATGGGGAAGTATCTTTGGCTGCATCTCAACCAGTGCTTCTCTACATTCTTGTTGCAGTAATTTTGATCTTTCCCTTTGATATTTTCTATTTGTCCTCTCGGTACTTCTTTTTGAGGACATTATTTCGGATAGCTTTCCCTTTTCAGCCAATTACATTTCCCGACTTTTTCTTGGCTGATATTTTAACCTCCATGGCAAAGGTGTTTTCAGATTTGGAACGTTCAGTTTGCAGAATGGTAAACAGACAGGTCGCGACAATTGCTTGGCTTGAAGCTGATTCAGTTTGTGGTAGCCACTCAGTTGCAATACCAATAGCCCTTGTTCTTCCTTATGTATGGCGTTTATTCCAATGTCTTCGCCAGTACAGAGATACCAAAGAAAAAAATTGTCTCTTCAATGCTTTAAAATATTCAACGGCAGTCCCAGTAATTTTTCTTTCTGCCCTCAAGTACCATGTCCTCCACGAGAAATGGACAACTCTTTATCGGCCACTGTGGCTTCTCTCAAGTGTCATTAATTCCCTCTATTCGTTTTACTGGGATATAACCAGAGATTGGGATTTAAGTGGTTTTTCCCGCATATTCAAGTTCAACAAACCAAATCTAATCTCCAACCTTTTATATGGTCGACAATGGGTATACTTTTGGGTGATTGGAAGCAACTTTGTTCTGCGCTGCTCTTGGACATACAAATTATCTGCCCATCTCCGCCATAACTACCTGACAGTGTTTACTATCACTCTTTTGGAGATGTTTCGACGCTTCCAGTGGGTATTTTTTAGAGTTGAAAATGAGTGGAATAAGATCACGCGGTCTGGTGTTCAACTCACAGAAATTCCAAGAGAAGAGGAGAAATTGCTAGGTTCCAACATTCATGATGTATAGAGAATCTCAAGCCAACCAAATTTTGCCAATATCTTCATATCAGCAACAGGTCTAATTCAATTTTTAAGCTAATATTAGTTCTAATCCCAAAAGCATTTTTCTGCATGTGTTCCTGGCCAACCAACATGAGGGAGTTTTCATGCACGCGCATGGATGGATGTCTGAGACTAAGACATAGTTGATTCCATTGCTGAAGCTATCTCGGCTCAGTCGTTCCTTTCTTAAGTTATTGCTTCATGCATATATGCTTTCTTCTGGAATAGGAGAGGTTCTGTCAATCTCAGCAGTTCAATGAAAATGAGGAAGCAAGCCTACAATTGCACGCAAATGTTCACTTATACATGAAGAGCTGCAAGAAGTAGTACTTAAGAACAATGGTGGCCATAATGGATGTTGCATTCTTTTTTCAAACTTTTTGTTTCCGGTTCTTTAAATTAGATCAGCAGTTGTAGCAAGAGAACGGACACAAAGGCTTTGTTTGTTTGCTACACAGTCAAATCAGGATACACTTCTAATAAAAGGAAAAAGGTCATAAATCAGTTACTTATACATGTCAGAAGTTTGATGTGTAGATTGTACTAGGCTCAGGAAAGAAATACCAATCTGTAAAGGGGCCTTATGGAAACAGAAATAACTGGAGTAATTAATAGTAAAAGCGTC

Coding sequences of Glyma18g46260

Limit To All Plant Sequences

>Glyma18g46260.1   sequence type=CDS   gene model=Glyma18g46260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATATAATTTCACCTGTGCAAAGTGCTATGCCATCTCCAACATTTCTGTGGAGGTTCAAGGTGACACTCTTTCTTATATGGGGCCTTACTTGCTGCAAGATTGGTTGGGATTCTGTCATGAGAATGGATGCAAATTTGCGAGATCTGTTTTTATACGAGGTGTTTTTGTATTACAACCCTCTCCTTCTTGTGACTATGATGGTTTGGCTTTGGGGAGCAAATTTGTGGGTATTTCTACAATCAACTGTAAGCTATGCCAAGGTTTTTGATCTTGATCAAAACCACCTTAGTCACAAAGAGACATGGAAGTGTAGCACTTGGATGACAATCATTGTCCCTACTAGCATGACTGCTTACCTCTATCTCTATTCTCATGGGGAAGTATCTTTGGCTGCATCTCAACCAGTGCTTCTCTACATTCTTGTTGCAGTAATTTTGATCTTTCCCTTTGATATTTTCTATTTGTCCTCTCGGTACTTCTTTTTGAGGACATTATTTCGGATAGCTTTCCCTTTTCAGCCAATTACATTTCCCGACTTTTTCTTGGCTGATATTTTAACCTCCATGGCAAAGGTGTTTTCAGATTTGGAACGTTCAGTTTGCAGAATGGTAAACAGACAGGTCGCGACAATTGCTTGGCTTGAAGCTGATTCAGTTTGTGGTAGCCACTCAGTTGCAATACCAATAGCCCTTGTTCTTCCTTATGTATGGCGTTTATTCCAATGTCTTCGCCAGTACAGAGATACCAAAGAAAAAAATTGTCTCTTCAATGCTTTAAAATATTCAACGGCAGTCCCAGTAATTTTTCTTTCTGCCCTCAAGTACCATGTCCTCCACGAGAAATGGACAACTCTTTATCGGCCACTGTGGCTTCTCTCAAGTGTCATTAATTCCCTCTATTCGTTTTACTGGGATATAACCAGAGATTGGGATTTAAGTGGTTTTTCCCGCATATTCAAGTTCAACAAACCAAATCTAATCTCCAACCTTTTATATGGTCGACAATGGGTATACTTTTGGGTGATTGGAAGCAACTTTGTTCTGCGCTGCTCTTGGACATACAAATTATCTGCCCATCTCCGCCATAACTACCTGACAGTGTTTACTATCACTCTTTTGGAGATGTTTCGACGCTTCCAGTGGGTATTTTTTAGAGTTGAAAATGAGTGGAATAAGATCACGCGGTCTGGTGTTCAACTCACAGAAATTCCAAGAGAAGAGGAGAAATTGCTAGGTTCCAACATTCATGATGTATAG

>Glyma18g46260.2   sequence type=CDS   gene model=Glyma18g46260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATATAATTTCACCTGTGCAAAGTGCTATGCCATCTCCAACATTTCTGTGGAGGTTCAAGGTGACACTCTTTCTTATATGGGGCCTTACTTGCTGCAAGATTGGTTGGGATTCTGTCATGAGAATGGATGCAAATTTGCGAGATCTGTTTTTATACGAGGTGTTTTTGTATTACAACCCTCTCCTTCTTGTGACTATGATGGTTTGGCTTTGGGGAGCAAATTTGTGGGTATTTCTACAATCAACTGTAAGCTATGCCAAGGTTTTTGATCTTGATCAAAACCACCTTAGTCACAAAGAGACATGGAAGTGTAGCACTTGGATGACAATCATTGTCCCTACTAGCATGACTGCTTACCTCTATCTCTATTCTCATGGGGAAGTATCTTTGGCTGCATCTCAACCAGTGCTTCTCTACATTCTTGTTGCAGTAATTTTGATCTTTCCCTTTGATATTTTCTATTTGTCCTCTCGGTACTTCTTTTTGAGGACATTATTTCGGATAGCTTTCCCTTTTCAGCCAATTACATTTCCCGACTTTTTCTTGGCTGATATTTTAACCTCCATGGCAAAGGTGTTTTCAGATTTGGAACGTTCAGTTTGCAGAATGGTAAACAGACAGGTCGCGACAATTGCTTGGCTTGAAGCTGATTCAGTTTGTGGTAGCCACTCAGTTGCAATACCAATAGCCCTTGTTCTTCCTTATGTATGGCGTTTATTCCAATGTCTTCGCCAGTACAGAGATACCAAAGAAAAAAATTGTCTCTTCAATGCTTTAAAATATTCAACGGCAGTCCCAGTAATTTTTCTTTCTGCCCTCAAGTACCATGTCCTCCACGAGAAATGGACAACTCTTTATCGGCCACTGTGGCTTCTCTCAAGTGTCATTAATTCCCTCTATTCGTTTTACTGGGATATAACCAGAGATTGGGATTTAAGTGGTTTTTCCCGCATATTCAAGTTCAACAAACCAAATCTAATCTCCAACCTTTTATATGGTCGACAATGGGTATACTTTTGGGTGATTGGAAGCAACTTTGTTCTGCGCTGCTCTTGGACATACAAATTATCTGCCCATCTCCGCCATAACTACCTGACAGTGTTTACTATCACTCTTTTGGAGATGTTTCGACGCTTCCAGTGGGTATTTTTTAGAGTTGAAAATGAGTGGAATAAGATCACGCGGTCTGGTGTTCAACTCACAGAAATTCCAAGAGAAGAGGAGAAATTGCTAGGTTCCAACATTCATGATGTATAG

Predicted protein sequences of Glyma18g46260

Limit To All Plant Sequences

>Glyma18g46260.1   sequence type=predicted peptide   gene model=Glyma18g46260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNIISPVQSAMPSPTFLWRFKVTLFLIWGLTCCKIGWDSVMRMDANLRDLFLYEVFLYYNPLLLVTMMVWLWGANLWVFLQSTVSYAKVFDLDQNHLSHKETWKCSTWMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYILVAVILIFPFDIFYLSSRYFFLRTLFRIAFPFQPITFPDFFLADILTSMAKVFSDLERSVCRMVNRQVATIAWLEADSVCGSHSVAIPIALVLPYVWRLFQCLRQYRDTKEKNCLFNALKYSTAVPVIFLSALKYHVLHEKWTTLYRPLWLLSSVINSLYSFYWDITRDWDLSGFSRIFKFNKPNLISNLLYGRQWVYFWVIGSNFVLRCSWTYKLSAHLRHNYLTVFTITLLEMFRRFQWVFFRVENEWNKITRSGVQLTEIPREEEKLLGSNIHDV*

>Glyma18g46260.2   sequence type=predicted peptide   gene model=Glyma18g46260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNIISPVQSAMPSPTFLWRFKVTLFLIWGLTCCKIGWDSVMRMDANLRDLFLYEVFLYYNPLLLVTMMVWLWGANLWVFLQSTVSYAKVFDLDQNHLSHKETWKCSTWMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYILVAVILIFPFDIFYLSSRYFFLRTLFRIAFPFQPITFPDFFLADILTSMAKVFSDLERSVCRMVNRQVATIAWLEADSVCGSHSVAIPIALVLPYVWRLFQCLRQYRDTKEKNCLFNALKYSTAVPVIFLSALKYHVLHEKWTTLYRPLWLLSSVINSLYSFYWDITRDWDLSGFSRIFKFNKPNLISNLLYGRQWVYFWVIGSNFVLRCSWTYKLSAHLRHNYLTVFTITLLEMFRRFQWVFFRVENEWNKITRSGVQLTEIPREEEKLLGSNIHDV*

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