SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01770 | AT | Annotation by Michelle Graham. TAIR10: vacuolar iron transporter 1 | chr2:334775-336425 REVERSE LENGTH=250 | SoyBase | E_val: 6.00E-20 | ISS |
| GO:0006880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular sequestering of iron ion | SoyBase | N/A | ISS |
| GO:0055072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005381 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG4473 | KOG | Uncharacterized membrane protein | JGI | ISS | |
| PF01988 | PFAM | VIT family | JGI | ISS | |
| UniRef100_C1E094 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar iron family transporter n=1 Tax=Micromonas sp. RCC299 RepID=C1E094_MICSR | SoyBase | E_val: 4.00E-60 | ISS |
| UniRef100_UPI000233EC82 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EC82 related cluster n=1 Tax=unknown RepID=UPI000233EC82 | SoyBase | E_val: 0 | ISS |
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Glyma18g46245 not represented in the dataset |
Glyma18g46245 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g228200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g46245.1 sequence type=CDS gene model=Glyma18g46245 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGAGAGAGGTGGCAGCAGTGGTGGCACCACCACAAGGCTCCTCCAGACAGCTGCGGAGGACGGTGGAGAGAGGAAGAGTGAGAGACCAAAGGAGCCTTGGAAAGGAGAGTATGTGAAGAGCATGGTTTTTGCAGGGCTTGATGCCATTATCACTTGCTTTTCTCTCATTTCCTCCATCTCTGCTAGCACTAGTTCCTCTGTGCATGTGCTGGTTCTTGGGGTCTCAAACCTAGTGGCAGATGCAATATCAATGGGGTTTGGGGACTTTGTGTCTGCTAGCTCTGAGCAGGATGTGATCATTGAGGAAAGGAGAGTGACAGAATGGGATGTCATTAACCAAAGGGACAAAGAGCAAACAGAGTTGGTCAAACACTATCAAAATCTAGGGATGGACTACAATGATGCAACCATGGTTGTGAACATATTCACAAAGTACAATGACATTCTAGTGGATCAAAGAATGGTAGCAGACAAGGGAATGCTGCCAGCAGACCAAGAAGTGAAGCCCTGGAGGAATGGCCTTGTGACCTTTGCATCCTTCATGCTCTTTGGCTCAACTCCTTTGCTCTCTTTCATCATCCTCATACCATTCACTGACAATGACTCTGTCAAGTTTCTCAGTGCTTGCATTGTTTCTGCACTTGCCCTTGCTCTTCTTGGGGTGGCAAAGGCAAGGATTGCTGGCCAAAACATCATGCTCTCTGCGGCTGTCACACTTCTCTGTGGTGCCATAGCTGCAGCTTCGGCTTATTTAGTGGGATGGTTGCTTAAGCTTATGGCAGGACTAGAGAGTTGA
>Glyma18g46245.1 sequence type=predicted peptide gene model=Glyma18g46245 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGERGGSSGGTTTRLLQTAAEDGGERKSERPKEPWKGEYVKSMVFAGLDAIITCFSLISSISASTSSSVHVLVLGVSNLVADAISMGFGDFVSASSEQDVIIEERRVTEWDVINQRDKEQTELVKHYQNLGMDYNDATMVVNIFTKYNDILVDQRMVADKGMLPADQEVKPWRNGLVTFASFMLFGSTPLLSFIILIPFTDNDSVKFLSACIVSALALALLGVAKARIAGQNIMLSAAVTLLCGAIAAASAYLVGWLLKLMAGLES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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