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Report for Sequence Feature Glyma18g46201

Feature Type:gene_model
Chromosome:Gm18
Start:55959728
stop:55962201
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46201
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10160AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr4:6336023-6337301 FORWARD LENGTH=225 SoyBaseE_val: 2.00E-17ISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR14155Panther RING FINGER PROTEIN 6/12/38 JGI ISS
PTHR14155:SF2Panther RING-FINGER PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_A2Q3Q2UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=A2Q3Q2_MEDTR SoyBaseE_val: 2.00E-120ISS
UniRef100_UPI000233E135UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E135 related cluster n=1 Tax=unknown RepID=UPI000233E135 SoyBaseE_val: 3.00E-141ISS

Expression Patterns of Glyma18g46201
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46201 not represented in the dataset
Glyma18g46201 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46201
ParalogEvidenceComments
Glyma09g40020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46201 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g227700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46201
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46201
>Glyma18g46201.1   sequence type=CDS   gene model=Glyma18g46201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACCAGAATCATTTGTGGGAGGCTAAGAGGGGGTGTTGAATCTCGGATGATGTACGAGATTGAATCAAGAATTGATATGGAACAGCCAGAACATCATGTTAATGACCCTGAATCCGATCCTGTTCTTCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAGAGAAAGAGAAGTATTGCGCATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGGAAACAATCCACCTGTCCAGTATGCCGTCTGCCGTTGAAAAACTCTTCCGAAACGAAACATGTGAGACCTGTGACATTTACCATGAGCCAATCCCTTGACGAGTCTCACACATCAGACAGAAACGATGATATTGAGAGATATGTTGAACCTACACCTACTGCAGCCAGTAACTCTTTACAACCAACTTCAGGAGAACAAGAAGCAAGGCAATGA
Predicted protein sequences of Glyma18g46201
>Glyma18g46201.1   sequence type=predicted peptide   gene model=Glyma18g46201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRIDMEQPEHHVNDPESDPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYREREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSDRNDDIERYVEPTPTAASNSLQPTSGEQEARQ*






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