Glyma18g46170 - SoyBase

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Report for Sequence Feature Glyma18g46170

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55936546
stop:	55942346
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28360	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L22p/L17e family protein \| chr4:14029294-14030926 REVERSE LENGTH=271	SoyBase	E_val: 7.00E-92	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1711	KOG	Mitochondrial/chloroplast ribosomal protein L22	JGI		ISS
PTHR13501	Panther	CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED	JGI		ISS
PF00237	PFAM	Ribosomal protein L22p/L17e	JGI		ISS
UniRef100_G7IDE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L22 n=2 Tax=Medicago truncatula RepID=G7IDE8_MEDTR	SoyBase	E_val: 9.00E-122	ISS
UniRef100_I1N3K6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3K6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46170

Paralog	Evidence	Comments
Glyma09g40030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g227500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46170

Limit To All Plant Sequences

>Glyma18g46170.1   sequence type=CDS   gene model=Glyma18g46170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCAGTGGCATAGGCACGTTTTTCCCTTTCTTCGCCACATTCACAAGCGAGTATTGGAACCCCAGGCCACTCATTCAGCTCCAAGCCTTGTAATTTCTCGCTTAGCCTCTTCTCTTTCACAAGGTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAGGGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCTGTTTTGTCACCTTTAGCCCCAGTTTCATTATTGAGTAGTTCAAAAGGTGAAGACCAGAAGCAGAAAGTTGTTACTAAGCCAGAAAAAGTTCAAGCGATATTAAAGGCAATAAAACAGAGTCCAAAGAAGGTCAACTTGGTTGCTGCTCTGGTTCGTGGTATGCTTGTTAAAGATGCATTGATGCAGTTGGAATTGACAATAAAACGAGCAGCAAAAACTGTATATCAGGTTATTCATTCAGCCCGAGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCATTGTTGCGGAAGCATTTGTAGGAAAGGGGTTTTATAAAAAGAGACTTTGGCCCCATGCCAAAGGAAAATCATCGCTTAGAGTAAGACCAGAATGCAGGCTAACAGTTGTAGTAAGAGAGATAACTGCTGAAGAAGAGGCAGAGATTGCTAGGCTGAGGGTCCACAACTTCAAGAGACTCACCAAGCGTCAGAAACGACTTGTGCCTCATCAGCTCATTGAGTCCAATCCTATTTGGGGCCGCAAAAACAAATCTAGTGGTCAAAACTTGAGTGCTACACCTGCATGA

Predicted protein sequences of Glyma18g46170

Limit To All Plant Sequences

>Glyma18g46170.1   sequence type=predicted peptide   gene model=Glyma18g46170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQWHRHVFPFLRHIHKRVLEPQATHSAPSLVISRLASSLSQGQLGRRTWTTTTLPCFSRPVFLTFQHQGISSSAQLLANSSEETPVLSPLAPVSLLSSSKGEDQKQKVVTKPEKVQAILKAIKQSPKKVNLVAALVRGMLVKDALMQLELTIKRAAKTVYQVIHSARANASHNHGLDPERLIVAEAFVGKGFYKKRLWPHAKGKSSLRVRPECRLTVVVREITAEEEAEIARLRVHNFKRLTKRQKRLVPHQLIESNPIWGRKNKSSGQNLSATPA*

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