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Report for Sequence Feature Glyma18g46161

Feature Type:gene_model
Chromosome:Gm18
Start:55924136
stop:55925808
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46161
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45720AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr2:18834468-18836129 FORWARD LENGTH=553 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
KOG0166 KOG Karyopherin (importin) alpha JGI ISS
PTHR23315Panther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING JGI ISS
PTHR23315:SF29Panther ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN JGI ISS
PF00514PFAM Armadillo/beta-catenin-like repeat JGI ISS
UniRef100_G8DCY0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Armadillo n=1 Tax=Phaseolus vulgaris RepID=G8DCY0_PHAVU SoyBaseE_val: 0ISS
UniRef100_I1L6Q4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6Q4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g46161
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46161 not represented in the dataset
Glyma18g46161 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46161
ParalogEvidenceComments
Glyma09g40050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46161 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g227400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46161
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46161
>Glyma18g46161.1   sequence type=CDS   gene model=Glyma18g46161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAAGATGGTGATGAGGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTTGTCCTTGATAAGGCCAGAGAGGTCAAGGGATTTGCTGGTAGATGGAAGATGATTGTTGCGAAATTGGAACAGATCCCTTCGCAGTTATCGGATTTGTCGAGCCATCCATGCTTCTCGAAGAATGCTCTTTGCAAGGAGCAGTTGCAGGCTGTGTCAAAAACACTTGGGGAAGCGATTGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTAGATGCATTGGCTGGGAAGCTTGATTTGAATTTGAGGGATTGTGGGCTTCTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTGCCATTGGCTGTGTCTAGTTCTGTGGCAGAATCAGATGTTGCAACACACAACAACATAAGGGAGTTGCTGGCGCGCCTTCAGATCGGGCACTTGGAAGCGAAGCACCGAGCTTTAGACAGCGTTGTTGAGGCCATGAAGGAGGATGAGAAGAGTGTTTTAGCTGTTCTTGGTCGGAGCAACATTGCTGCTTTGGTTCAATTGCTTACAGCTACCTCTCCCAGGATAAGAGAAAAAACAGTTACTGTAATATGCTCACTTGCAGAAACTGGTAGCTGTGAAAATTGGCTAGTTTCTGAAGGAGTTCTGCCTCCTCTTATAAGGCTTGTTGAATCCGGCAGTGTGGTGGGGAAGGAGAAGGCAACAATATCCCTTCAGAGGTTGTCGATGTCAGCCGAAACAGCGCGAGCAATCGTGGGACATGGCGGGGTTCGTCCATTGGTTGCACTTTGTCAAACCGGTGATTCTGTGTCACAGGCCGCGGCTGCATGTACTCTGAAGAACATATCAGCTGTTCCTGAGGTGAGACAAGCATTGGCTGAAGAAGGGATTGTGACGCATGCTGCAGAGTGCTTGCAGAACCTCACTGCAAGCAATGAGAATCTAAGGAAGAGTGTCATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAGGAATCTGCGGTTGGAGCATTGAGGAACTTGGTTGGATTAGTCCCTGAGGAATCCTTGGTTTCCCTCGGTTTGATCCCCCGTCTGACTCATGTGTTAAAGTCCGGATCCTTAGGTGCTCAGCAAGCAGCTGCGGCTGCGATATGCTGCGCTTGCAGTTCCACAGACATGAAGAAAATGGTTGGTGAAGCTGGCTGCATCCCTCTCCTTGTGAAGATGCTTGAGGCCAAGTCAAACAGTGTTAGAGAGGTTGCTGCTCAAGCAATAGCAAGCTTGATGGTTGTGTCTCAGAATCGAAGAGAGGTTAAGAAGGATGATAAGAGTGTGCCAAACTTGGTTCAGTTGCTTGATCCAAGCCCTCAGAATACTGCAAAAAAATATGCAGTTACTTGCCTTGGATCACTTTCTTCATGTAAGAAATGTAAGAAGCTAATGATCTCGTATGGGGCAATTGGGTATCTGAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTGCATGAAAGGTTGGAAAGAGGGAAATTTAGAAGTTTGTTTAGCAAGAAATAG
Predicted protein sequences of Glyma18g46161
>Glyma18g46161.1   sequence type=predicted peptide   gene model=Glyma18g46161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEDGDEVDARSTEDWLLHAQELVPVVLDKAREVKGFAGRWKMIVAKLEQIPSQLSDLSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCVKEKYEGKLRMQSDLDALAGKLDLNLRDCGLLIKTGVLGEATLPLAVSSSVAESDVATHNNIRELLARLQIGHLEAKHRALDSVVEAMKEDEKSVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAETGSCENWLVSEGVLPPLIRLVESGSVVGKEKATISLQRLSMSAETARAIVGHGGVRPLVALCQTGDSVSQAAAACTLKNISAVPEVRQALAEEGIVTHAAECLQNLTASNENLRKSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGLVPEESLVSLGLIPRLTHVLKSGSLGAQQAAAAAICCACSSTDMKKMVGEAGCIPLLVKMLEAKSNSVREVAAQAIASLMVVSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSCKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKFRSLFSKK*






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