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Report for Sequence Feature Glyma18g46101

Feature Type:gene_model
Chromosome:Gm18
Start:55871890
stop:55874958
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27220AT Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein | chr4:13633953-13636712 REVERSE LENGTH=919 SoyBaseE_val: 5.00E-62ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
KOG4658 KOG Apoptotic ATPase JGI ISS
PTHR23155Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI ISS
PTHR23155:SF121Panther SUBFAMILY NOT NAMED JGI ISS
PF00931PFAM NB-ARC domain JGI ISS
UniRef100_C0JJH4UniRef Annotation by Michelle Graham. Best UniRef hit: Rpp4 candidate 1 n=1 Tax=Glycine max RepID=C0JJH4_SOYBN SoyBaseE_val: 0ISS
UniRef100_C0JJH4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Rpp4 candidate 1 n=1 Tax=Glycine max RepID=C0JJH4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46101 not represented in the dataset

Glyma18g46101 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g46101.1   sequence type=CDS   gene model=Glyma18g46101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCAATTACTTCTGCCACTGCCCAAAGTGCACTGCAAATTGCAGAACATGTGGTCAAACGACAAGTGGGTTACATATTTAATTACAAAGACAAATTTAAAGAGGTGGAACAATACATTGAGAGGCTGGATGATACTAGGAAGAGGGTTCAAAATGAAGTTAATGATGCAGAGAAGAACGGAGAAGAAATTAACGATGAAGTTCAACATTGGTTAAAACAGGTGGATGAGAAGATAAAAAAATATGAGTGTTTTATTGATGATGAACGCCATGCACAGACAAGGTGTTCCATTAGATTGATCTTTCCAAATAACTTGTCATTGAGGTATCGGTTAGGCAGAAAAGCTACAAAGATAGTAGAGGAAATCAAAGCAGATGGACATTCAAATAAAAAGTTTGATAAAGTTTCATATCGGTTGGGCCCATCCTCTGATGCTGCTTTGTTAAACACTGGTTATGTGAGCTTTGGGTCGAGAAATGAAACTATGGAGAAGATTATGAAAGCACTGGAAGACTCGACAGTTAATATTGTTGGAGTCTATGGGGCTGGTGGTGTGGGTAAGACTACTTTAGTCAAAGAAGTTGCTAACAAAGCTCGAGAAAAGAAGTTGTTCAATATGGTGGTCATGGCAAATGTAACAAGAATTCCTGACATAGAAAAAATTCAAGGACAAATTGCTGAGATGTTGGGAATGAGATTGGAAGAGGAAAGTGAAATTGTAAGAGCAGATCGCATTCGAAAGAGGTTAATGAATGAAAAGGAGAATACCCTTATAATCCTAGATGATCTCTGGGATGGATTGAACTTGAATATATTGGGGATTCCACAAAAGTTATCTGGTGATCACAAGGGATGCAAAATTCTTCTAACATCCAGAAGTAAAGAAGTAATATGTAATAAAATGGATGTGCAGGAGAGATCAACTTTCTCGGTAGGAGTCCTTGATGAAAACGAGGCAAAGAGTTTCCTTAAGAAATTGGCGGGAATACGTGCCCAAAGTTTTGAATTTGATGAGAAAGTCATTGAAATTGCCAAAATGTGCGATGGATTGCCTATGGCATTAGTTTCCATAGGAAGGGCTCTAAAGAATAAAAGCTCCTTTGTATGGCAGGATGTCTGTCAACGAATTAAACGACAAAGTTTTACAGAAGGGCACGAATCTATCGAGTTCTCTGTAAATTTGAGCTTTGAGCATCTAAAAAATGAGCAGCTGAAACATATTTTCTTACTGTGTGCTAGAATGGGAAATGATGCTTTGATTATGGACTTGGTGAAGTTCTGTATCGGGTTGGGTTTGCTTCAAGGGGTCCACACAATTAGAGAAGCGAGAAACAAAGTAAATATGCTGATAGAGGAGCTAAAAGAATCAACTTTGTTGGTGGAAAGTCTCTCTCATGACCGCTTCAACATGCATGACATTGTGCGGGATGTTGCTCTTTCAATATCATCCAAAGAAAAACATGTTTTTTTTATGAAAAATGGCATAGTAGACGAGTGGCCTCACAAAGATGAACTTGAAAGGTACACTGCTATATGTTTACACTTTTGTGATATCAATGATGGGCTTCCCGAGAGTATACACTGTCCTAGACTTGAAGTCTTACATATTGACAGTAAAGATGATTTTTTGAAAATACCAGACGACTTTTTTAAAGATATGATTGAACTCAGAGTCTTGATATTGACTGGTGTTAATCTTTCATGCTTACCTTCTTCTATTAAATGCCTAAAAAAACTGAGAATGCTTAGTTTGGAGAGATGCACTCTAGGAGAGAACTTATCAATCATTGGAGAGTTAAAGAAATTACGAATTCTTACTCTTTCAGGATCTAACATTGAAAGTTTGCCTCTAGAATTTGGGCAATTGGATAAGCTGCAACTTTTTGACATAAGCAATTGCTCAAAACTAAGAGTAATACCTTCCAATACCATATCAAGGATGAACAGTTTGGAAGAGTTTTACATGAGAGACAGCTTGATTCTGTGGGAGGCTGAGGAGAATATCCAAAGTCAAAAAGCTATTCTTTCTGAGTTGAGGCACTTGAATCAGTTGCAAAATCTAGACGTACACATTCAGAGTGTTTCCCATTTTCCGCAGAACTTGTTTTTGGACATGTTGGATAGTTACAAGATTGTCATTGGTGAATTCAACATGCTTAAAGAGGGAGAATTCAAAATCCCTGACATGTATGACCAAGCGAAATTTTTGGCATTGAACCTAAAAGAAGGTATTGACATTCATTCTGAAACATGGGTTAAAATGTTGTTCAAGAGTGTTGAATATTTGCTGCTGGGAGAACTCAATGATGTTCATGATGTTTTTTATGAATTAAATGTTGAAGGATTTCCATATTTGAAACATTTATCCATTGTGAACAATTTTGGTATTCAATATATTATTAACTCAGTGGAGCGGTTTCACCCTTTACTGGCTTTTCCCAAATTGGAGTCCATGTGTCTTTACAAACTGGATAATTTGGAGAAAATATGTGGCAATAATCATCTTGAAGAGGCTTCCTTTTGCAGATTAAAAGTCATCAAGATTAAAACATGTGATAAATTGGAAAACATTTTCCCATTTTTCATGATTGAGTTCCCTCAATTACGACTTTTAACATTGAAATCTTTACCAGCATTTGCTTGTTTATATACCAACGACAAGATGCCTTGTAGTGCACAATCATTGGAAGTCCAAGTGCAAAACAGAAACAAAGATATCATCACTGAAGTTGAGCAAGGTGCCACTAGTTCTTGTATATCACTCTTCAATGAAAAG

>Glyma18g46101.1   sequence type=predicted peptide   gene model=Glyma18g46101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPITSATAQSALQIAEHVVKRQVGYIFNYKDKFKEVEQYIERLDDTRKRVQNEVNDAEKNGEEINDEVQHWLKQVDEKIKKYECFIDDERHAQTRCSIRLIFPNNLSLRYRLGRKATKIVEEIKADGHSNKKFDKVSYRLGPSSDAALLNTGYVSFGSRNETMEKIMKALEDSTVNIVGVYGAGGVGKTTLVKEVANKAREKKLFNMVVMANVTRIPDIEKIQGQIAEMLGMRLEEESEIVRADRIRKRLMNEKENTLIILDDLWDGLNLNILGIPQKLSGDHKGCKILLTSRSKEVICNKMDVQERSTFSVGVLDENEAKSFLKKLAGIRAQSFEFDEKVIEIAKMCDGLPMALVSIGRALKNKSSFVWQDVCQRIKRQSFTEGHESIEFSVNLSFEHLKNEQLKHIFLLCARMGNDALIMDLVKFCIGLGLLQGVHTIREARNKVNMLIEELKESTLLVESLSHDRFNMHDIVRDVALSISSKEKHVFFMKNGIVDEWPHKDELERYTAICLHFCDINDGLPESIHCPRLEVLHIDSKDDFLKIPDDFFKDMIELRVLILTGVNLSCLPSSIKCLKKLRMLSLERCTLGENLSIIGELKKLRILTLSGSNIESLPLEFGQLDKLQLFDISNCSKLRVIPSNTISRMNSLEEFYMRDSLILWEAEENIQSQKAILSELRHLNQLQNLDVHIQSVSHFPQNLFLDMLDSYKIVIGEFNMLKEGEFKIPDMYDQAKFLALNLKEGIDIHSETWVKMLFKSVEYLLLGELNDVHDVFYELNVEGFPYLKHLSIVNNFGIQYIINSVERFHPLLAFPKLESMCLYKLDNLEKICGNNHLEEASFCRLKVIKIKTCDKLENIFPFFMIEFPQLRLLTLKSLPAFACLYTNDKMPCSAQSLEVQVQNRNKDIITEVEQGATSSCISLFNEK







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