Glyma18g46080 - SoyBase

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Report for Sequence Feature Glyma18g46080

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55841599
stop:	55844444
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01150	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF674) \| chr5:51988-53649 FORWARD LENGTH=501	SoyBase	E_val: 6.00E-59	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05056	PFAM	Protein of unknown function (DUF674)	JGI		ISS
UniRef100_Q01HF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0142I02-OSIGBa0101B20.30 protein n=1 Tax=Oryza sativa RepID=Q01HF9_ORYSA	SoyBase	E_val: 3.00E-56	ISS
UniRef100_UPI000233EC80	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC80 related cluster n=1 Tax=unknown RepID=UPI000233EC80	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g46080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g226600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46080

Limit To All Plant Sequences

>Glyma18g46080.1   sequence type=CDS   gene model=Glyma18g46080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCAACCAAGAAATAACAGCCCCTTTGAGATATTGGGTGGACAATGAACGAAAGCGTGTAGTTATGGCGGAAGCAAGTGGACACTTTGTAGATGTTCTCTTTAGTTTCCTAACCCTTCCATTGGGAACTATCATCCGGCTTGGGAACACATTTGGGCAACCAATAGAGATTGGTTGCATTAACAATCTATTCAAGAGTGTGGAAGCTCTGAACCCAGATGTTTTCTGGAACGACATCTGCAAGCGAATGTTGCTTTCTCCGCGCAACCCGTTACAATTCTCTTACCAGAGACTAAAACTGAAGGTGGATGATACGCAGCCCACAAAGTATTTCGTGTGTCACATCTGTTCAAAGGGCAGTGATTTCTCGCTGAGTACTTTTGATGAGGTAAAGTGCCACTGTGGGAACTTGATGAAAAGACAACTAGATATGCTGGTAGAGCCTGCTGGTGGCAATGGTGTTTTTGTTAAAGGGGACGCCATGTTCTTGATCTTCGATGACTTGACAGTGCTCCGTAGCTCTCCCAGTGTCTCCTTCAAACCACCACTCCAACTCGGACACAAAGAATTCAGAAAGGTGGAAGAAAAATCTCTAGATGTTGACACAAATAAGGTATTTAGCATACTAAACCAAGCATTAACCTCCAAATCTGCTCTAAGTGTCACATTGGAAAACGGAAAATCTGAGCCATCGTCCTCTTTCTTACCAGATATTGGCCCAAGTCGATGGAAAGATTCCATAAAAATCAAGGTAATAGTGAGCAAATCACAGAACAAGATTCTGTTTGTTGAAGCAGATGGAGACTTTGTCGATTTTCTAGTCAGCTTCCTCACGATGCCACTTGGATCTATTATGTACCTTGTGAATGGCAAGTTATCATTGGGAAGCATTGATAAGTTGTACACAAGTGTGAAGAATCTCGATCCATCATGGTTCATAGCGTCGTCAACCAAATCCTTACTTAATCCAAAGGTTGCTCTTCATTTTGGTTGTGGGAGCAATCCAATAAATGCTTCAGAAGAAGACACTGGCAAGTATTGGTATGGCACTGGAATAGTGAAAGATAATAGGGGACGTATCATCTGTGAAAAGAATATGATTTCAAAGAAAAAAGATATGCTAAAAGATCCAAAAGATATCAAACTTTTGGACCCAAGATCTTCAGATGGAGCAAGAAAATCCGATGTGGGATTTATGAAGAGGCCATGTCTATTTGTTGTTAGCGATAATCTGGAAGTGAAAGCGATGACAACTTCTTCAAGCATTCCATGTCCATTTATGGAGAATGACCGGTTGTTGGATGATTTGGAGGAACATTTGGTGGAAATCAGGAAGTCACAGGCACTAAACCTATTGATGGCTTCTTTGACATCCAACGAAGCTGCTTTCACAAGGAGCCTATCCCACTTATTGTGGAATTGGAAATGCCAAAGATGCATTCCATTTTGGGGTTTACTGGGAAGGAAGAAAATAAGGCACAGAAAGAAAAAAGAAAAGGAAGATAAAGAAAGTGAGAAAGACATATAA

Predicted protein sequences of Glyma18g46080

Limit To All Plant Sequences

>Glyma18g46080.1   sequence type=predicted peptide   gene model=Glyma18g46080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNQEITAPLRYWVDNERKRVVMAEASGHFVDVLFSFLTLPLGTIIRLGNTFGQPIEIGCINNLFKSVEALNPDVFWNDICKRMLLSPRNPLQFSYQRLKLKVDDTQPTKYFVCHICSKGSDFSLSTFDEVKCHCGNLMKRQLDMLVEPAGGNGVFVKGDAMFLIFDDLTVLRSSPSVSFKPPLQLGHKEFRKVEEKSLDVDTNKVFSILNQALTSKSALSVTLENGKSEPSSSFLPDIGPSRWKDSIKIKVIVSKSQNKILFVEADGDFVDFLVSFLTMPLGSIMYLVNGKLSLGSIDKLYTSVKNLDPSWFIASSTKSLLNPKVALHFGCGSNPINASEEDTGKYWYGTGIVKDNRGRIICEKNMISKKKDMLKDPKDIKLLDPRSSDGARKSDVGFMKRPCLFVVSDNLEVKAMTTSSSIPCPFMENDRLLDDLEEHLVEIRKSQALNLLMASLTSNEAAFTRSLSHLLWNWKCQRCIPFWGLLGRKKIRHRKKKEKEDKESEKDI*

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