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Report for Sequence Feature Glyma18g46011

Feature Type:gene_model
Chromosome:Gm18
Start:55720203
stop:55720865
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46011
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G05350AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr4:2726910-2727530 REVERSE LENGTH=206 SoyBaseE_val: 7.00E-12ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22766Panther RING FINGER PROTEIN 24-RELATED JGI ISS
PTHR22766:SF21Panther SUBFAMILY NOT NAMED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_C0JJG9UniRef Annotation by Michelle Graham. Best UniRef hit: Zinc finger protein n=1 Tax=Glycine max RepID=C0JJG9_SOYBN SoyBaseE_val: 2.00E-160ISS
UniRef100_C0JJG9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Glycine max RepID=C0JJG9_SOYBN SoyBaseE_val: 2.00E-160ISS

Expression Patterns of Glyma18g46011
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46011 not represented in the dataset
Glyma18g46011 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g46011 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g226100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46011
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46011
>Glyma18g46011.1   sequence type=CDS   gene model=Glyma18g46011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAACAATTTCAAGAACCCCCGTTGTTCTCCCATGTTGCTAACACTTGCATCAATCATGTAGTCTACATAACAATCATTTTAACAAGTTTTGATCCGAGCAGTGCTGCCGAAGTTTGTCGAATGCAGTCACCACCAATTGAACGCGACATTTTCAATCATCCGTCTATATGTCATGATATATTAAGGCAATTGCTTGCATACTCGTTTGTACCTATAAACTTTTACATTGGCCAGGACTGTGACCTAATTCCAAACCTTTCTACTAGGTTATGCGAGTCAGTATTACAGCGATCCGGGGTTCATATAAATTATTTTCAGGTGTTCATTACGGTATTCCAGACCCACTGTTGTTATAATGTAGTGGGTACACCATTTTTTTTTCAAGCTGATGAACTTCCATCAAGAGAAATGGTGCAAAGAATGACCTGTGATGGCGGTGAACATTCTTTGCCTGCGGGGGCAATGGCACTCAAAAGATTTTTGATTCAAGATGAACAGGAGGATCCATGTGCCATATGCATCAAGGATTTCAACTCTGGTGATAATGCAGCAAGGTTGCCTTGCTCTCATGTCTTCCACCCTGATTGTATTTTGCAATGGTTTGTTCAGAAGAGTACGTGCCCTTTGTGCTGTTTCGCTTGTAGTTGTGTCTCTTGA
Predicted protein sequences of Glyma18g46011
>Glyma18g46011.1   sequence type=predicted peptide   gene model=Glyma18g46011   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQQFQEPPLFSHVANTCINHVVYITIILTSFDPSSAAEVCRMQSPPIERDIFNHPSICHDILRQLLAYSFVPINFYIGQDCDLIPNLSTRLCESVLQRSGVHINYFQVFITVFQTHCCYNVVGTPFFFQADELPSREMVQRMTCDGGEHSLPAGAMALKRFLIQDEQEDPCAICIKDFNSGDNAARLPCSHVFHPDCILQWFVQKSTCPLCCFACSCVS*






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