Glyma18g45990 - SoyBase

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Report for Sequence Feature Glyma18g45990

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55700975
stop:	55706481
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00740	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:307815-310298 REVERSE LENGTH=600	SoyBase	E_val: 0	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF58	Panther	DEHYDRATION-RESPONSIVE PROTEIN-RELATED	JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_C0JJG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dehydration responsive protein n=2 Tax=Glycine max RepID=C0JJG7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N3I9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3I9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45990

Paralog	Evidence	Comments
Glyma09g40110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g225900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g45990

Limit To All Plant Sequences

>Glyma18g45990.3   sequence type=transcript   gene model=Glyma18g45990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATAATATAAATGCATGTGTAATGTCCCAGAAACATTAATTGGTCCAAAACCAGAGAAGCTGAGCCATATCATACTAGATCCTGCTGCTGCTGCTTCTGCTTCTGCTTCTTCTTTCCCCCTTTTCTCACTCCCACTCTTGAAACTTGGCTCACTCTCTCACCCCCCAAAAGAAACCACCAACAAACACTTCACCAAATCCCCAACAAACTCAGTTACTTCATTGCAAGCTCTATAAGTCTATAACACTGTTAATTCCACCAGAGAAAGAAACAATCACCCCCACGAAGCAAGCAAAGCAACCCATTACGATTCCTGCTTAAAGCACCGATTTTGACACTGAATCCCAAGACCCAGATGGCGCAATAGCCAGATCCGTGATTCTCCTCAAATGGGTCACTCCAATTCTTCCTCCTCCTCGTCACCTTCCAAGCGCGGCCACGCGCTGCGGCAATGGCGGCTCCTGGACTTGGTCTCCGGCGTGTTCTTCTTCCTGGTGCTGCTCTTCTTCACCATGGTCTTTACCCCGCTCGGTGACTCGCTCGCCGCCTCCGGCCGCCAGACGCTGCTCCGCTCCGGCGCCGACCCGCAGCAGCGCCACCGCCTCGTGGCGGCGATCGAGGCGGGTGGACGCGGCGTGGAGGCGTGCCCCGCTGCGGACGCGGACCACATGCCGTGCGAGGATCCGAGGCTGAACAGCCAGCTGAGCAGGGAGATGAACTACTACAGGGAGAGGCACTGCCCCAGGCCGGAGGACTCGCCCCTATGCTTGATTCCGCCGCCCCATGGGTACCGGGTGCCGGTGCCGTGGCCGGAGAGCTTGCACAAGATATGGCACAGCAACATGCCATACAACAAGATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAACTAGAAGGTCAACACTTTATATTCCCTGGTGGTGGTACGATGTTTCCAGATGGAGCAGAGCAATATATTGAAAAACTTGGTCAATACATTCCTATAAGTGAAGGTGTTCTGAGGACTGCGCTTGACATGGGGTGTGGGGTTGCTAGTTTTGGAGGATATATGCTATCTAAAAATATTTTAACCATGTCTTTTGCTCCAAGAGATTCACATAAAGCTCAAATACAATTTGCCTTGGAAAGAGGAATACCAGCTTTTGTTGCTATGCTTGGCACTCGCAGACTCCCATTTCCTGCGTTTGGATTTGACTTAGTTCATTGCTCTAGGTGCTTGATCCCATTTACAGCCTACAATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGCCCTGGTGGATATTTAGTCATCTCCGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATGGTCTGATCTCCAAGCGGTGGCAAGAGCCTTGTGTTATGAACTGATTGCTGTAGATGGTAACACTGTGATCTGGAAGAAGCCTGTGGGAGAATCATGTCTTCCCAATGAAAATGAATTTGGTCTTGAGTTATGTGATGATTCAGATTACCCAAGTCAAGCTTGGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATCTGTTAAAGGTGATTATGCTATTGGGATAATTCCCAAGTGGCCAGAGAGGCTAACTGCAATACCTCCAAGATCCACACTCCTGAAAAATGGTGTTGATGTGTATGAGGCTGACACTAAGCGGTGGGCAAGGAGGGTGGCACACTATAAGAATTCTCTAAAAATCAAGTTGGGCACTCGATTTGTGCGCAATGTCATGGACATGAATGCATTATTTGGAGGTTTTGCGGCAGCCTTAAAATCTGATCCTGTGTGGGTGATCAATGTAGTTCCTGCACTAAAGCCACCCACTCTTGATGTTATCTTTGACAGAGGCCTTATTGGAGTCTATCATGACTGGTGCGAACCATTTTCAACATATCCTCGTAGCTATGATCTAATCCATGTGGCCAGCATTGAATCCCTTATAAAAGATCCAGCATCTGGTCAAAACAGATGTACTCTTGTTGATTTGATGGTGGAAATTGATCGAATGTTGCGTCCTGAGGGAACTGTGGTGGTAAGGGATGCCCCTGAAGTAATTGACAGAGTAGCTCGCATTGCCAGTGCAGTGAGGTGGAAGCCTACCGTTTATGATAAAGAACCCGAATCACACGGCAGAGAAAAGATTCTAGTTGCGACCAAGACACTCTGGAAGCTCTAATTCCTATTCCATGGATGCACGCAACTGTGTAATTTAGGTAAACTCCCTTTTCCATTCTGTGGGGTTGGAGGTGTCAAAGATATCTTCTCTATGCATCAAACGGGTGCGATTTTCTAATTTTGTTCAACATTCTCTCATATAAAGAAGATAGTGAGGTTAAGATTTGAAAAAGATTGGAAGACCCTTGTGCAGTTTTAGGTGGAAAGCGGAAGCCAGTGTTGATTTTATTTTCTCTCAACTTAAAGAATGGGTTGTAATTCAAAAATATATATTTATTAAAAAAGAATAATCGTTGATTCTAATTCAGCTACATTTCACTCTTATCTTTTCTTTTTCATTTGTATTTTATTGTGATTTTTTATCATGGATTGAATCCAAATACGTATTAGAGATGTAATATTAAATCATTTGCGAGGATTTCCTATGTGCTCAAGTTTTTTACATTGTTAATTAAGGGCATGGTATCGCAG

Coding sequences of Glyma18g45990

Limit To All Plant Sequences

>Glyma18g45990.2   sequence type=CDS   gene model=Glyma18g45990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCACTCCAATTCTTCCTCCTCCTCGTCACCTTCCAAGCGCGGCCACGCGCTGCGGCAATGGCGGCTCCTGGACTTGGTCTCCGGCGTGTTCTTCTTCCTGGTGCTGCTCTTCTTCACCATGGTCTTTACCCCGCTCGGTGACTCGCTCGCCGCCTCCGGCCGCCAGACGCTGCTCCGCTCCGGCGCCGACCCGCAGCAGCGCCACCGCCTCGTGGCGGCGATCGAGGCGGGTGGACGCGGCGTGGAGGCGTGCCCCGCTGCGGACGCGGACCACATGCCGTGCGAGGATCCGAGGCTGAACAGCCAGCTGAGCAGGGAGATGAACTACTACAGGGAGAGGCACTGCCCCAGGCCGGAGGACTCGCCCCTATGCTTGATTCCGCCGCCCCATGGGTACCGGGTGCCGGTGCCGTGGCCGGAGAGCTTGCACAAGATATGGCACAGCAACATGCCATACAACAAGATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAACTAGAAGGTCAACACTTTATATTCCCTGGTGGTGGTACGATGTTTCCAGATGGAGCAGAGCAATATATTGAAAAACTTGGTCAATACATTCCTATAAGTGAAGGTGTTCTGAGGACTGCGCTTGACATGGGGTGTGGGGTTGCTAGTTTTGGAGGATATATGCTATCTAAAAATATTTTAACCATGTCTTTTGCTCCAAGAGATTCACATAAAGCTCAAATACAATTTGCCTTGGAAAGAGGAATACCAGCTTTTGTTGCTATGCTTGGCACTCGCAGACTCCCATTTCCTGCGTTTGGATTTGACTTAGTTCATTGCTCTAGGTGCTTGATCCCATTTACAGCCTACAATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGCCCTGGTGGATATTTAGTCATCTCCGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATGGTCTGATCTCCAAGCGGTGGCAAGAGCCTTGTGTTATGAACTGATTGCTGTAGATGGTAACACTGTGATCTGGAAGAAGCCTGTGGGAGAATCATGTCTTCCCAATGAAAATGAATTTGGTCTTGAGTTATGTGATGATTCAGATTACCCAAGTCAAGCTTGGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATCTGTTAAAGGTGATTATGCTATTGGGATAATTCCCAAGTGGCCAGAGAGGCTAACTGCAATACCTCCAAGATCCACACTCCTGAAAAATGGTGTTGATGTGTATGAGGCTGACACTAAGCGGTGGGCAAGGAGGGTGGCACACTATAAGAATTCTCTAAAAATCAAGTTGGGCACTCGATTTGTGCGCAATGTCATGGACATGAATGCATTATTTGGAGGTTTTGCGGCAGCCTTAAAATCTGATCCTGTGTGGGTGATCAATGTAGTTCCTGCACTAAAGCCACCCACTCTTGATGTTATCTTTGACAGAGGCCTTATTGGAGTCTATCATGACTGGTGCGAACCATTTTCAACATATCCTCGTAGCTATGATCTAATCCATGTGGCCAGCATTGAATCCCTTATAAAAGATCCAGCATCTGGTCAAAACAGATGTACTCTTGTTGATTTGATGGTGGAAATTGATCGAATGTTGCGTCCTGAGGGAACTGTGGTGGTAAGGGATGCCCCTGAAGTAATTGACAGAGTAGCTCGCATTGCCAGTGCAGTGAGGTGGAAGCCTACCGTTTATGATAAAGAACCCGAATCACACGGCAGAGAAAAGATTCTAGTTGCGACCAAGACACTCTGGAAGCTCTAA

>Glyma18g45990.3   sequence type=CDS   gene model=Glyma18g45990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCACTCCAATTCTTCCTCCTCCTCGTCACCTTCCAAGCGCGGCCACGCGCTGCGGCAATGGCGGCTCCTGGACTTGGTCTCCGGCGTGTTCTTCTTCCTGGTGCTGCTCTTCTTCACCATGGTCTTTACCCCGCTCGGTGACTCGCTCGCCGCCTCCGGCCGCCAGACGCTGCTCCGCTCCGGCGCCGACCCGCAGCAGCGCCACCGCCTCGTGGCGGCGATCGAGGCGGGTGGACGCGGCGTGGAGGCGTGCCCCGCTGCGGACGCGGACCACATGCCGTGCGAGGATCCGAGGCTGAACAGCCAGCTGAGCAGGGAGATGAACTACTACAGGGAGAGGCACTGCCCCAGGCCGGAGGACTCGCCCCTATGCTTGATTCCGCCGCCCCATGGGTACCGGGTGCCGGTGCCGTGGCCGGAGAGCTTGCACAAGATATGGCACAGCAACATGCCATACAACAAGATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAACTAGAAGGTCAACACTTTATATTCCCTGGTGGTGGTACGATGTTTCCAGATGGAGCAGAGCAATATATTGAAAAACTTGGTCAATACATTCCTATAAGTGAAGGTGTTCTGAGGACTGCGCTTGACATGGGGTGTGGGGTTGCTAGTTTTGGAGGATATATGCTATCTAAAAATATTTTAACCATGTCTTTTGCTCCAAGAGATTCACATAAAGCTCAAATACAATTTGCCTTGGAAAGAGGAATACCAGCTTTTGTTGCTATGCTTGGCACTCGCAGACTCCCATTTCCTGCGTTTGGATTTGACTTAGTTCATTGCTCTAGGTGCTTGATCCCATTTACAGCCTACAATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGCCCTGGTGGATATTTAGTCATCTCCGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATGGTCTGATCTCCAAGCGGTGGCAAGAGCCTTGTGTTATGAACTGATTGCTGTAGATGGTAACACTGTGATCTGGAAGAAGCCTGTGGGAGAATCATGTCTTCCCAATGAAAATGAATTTGGTCTTGAGTTATGTGATGATTCAGATTACCCAAGTCAAGCTTGGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATCTGTTAAAGGTGATTATGCTATTGGGATAATTCCCAAGTGGCCAGAGAGGCTAACTGCAATACCTCCAAGATCCACACTCCTGAAAAATGGTGTTGATGTGTATGAGGCTGACACTAAGCGGTGGGCAAGGAGGGTGGCACACTATAAGAATTCTCTAAAAATCAAGTTGGGCACTCGATTTGTGCGCAATGTCATGGACATGAATGCATTATTTGGAGGTTTTGCGGCAGCCTTAAAATCTGATCCTGTGTGGGTGATCAATGTAGTTCCTGCACTAAAGCCACCCACTCTTGATGTTATCTTTGACAGAGGCCTTATTGGAGTCTATCATGACTGGTGCGAACCATTTTCAACATATCCTCGTAGCTATGATCTAATCCATGTGGCCAGCATTGAATCCCTTATAAAAGATCCAGCATCTGGTCAAAACAGATGTACTCTTGTTGATTTGATGGTGGAAATTGATCGAATGTTGCGTCCTGAGGGAACTGTGGTGGTAAGGGATGCCCCTGAAGTAATTGACAGAGTAGCTCGCATTGCCAGTGCAGTGAGGTGGAAGCCTACCGTTTATGATAAAGAACCCGAATCACACGGCAGAGAAAAGATTCTAGTTGCGACCAAGACACTCTGGAAGCTCTAA

Predicted protein sequences of Glyma18g45990

Limit To All Plant Sequences

>Glyma18g45990.2   sequence type=predicted peptide   gene model=Glyma18g45990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHSNSSSSSSPSKRGHALRQWRLLDLVSGVFFFLVLLFFTMVFTPLGDSLAASGRQTLLRSGADPQQRHRLVAAIEAGGRGVEACPAADADHMPCEDPRLNSQLSREMNYYRERHCPRPEDSPLCLIPPPHGYRVPVPWPESLHKIWHSNMPYNKIADRKGHQGWMKLEGQHFIFPGGGTMFPDGAEQYIEKLGQYIPISEGVLRTALDMGCGVASFGGYMLSKNILTMSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPFTAYNASYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVIWKKPVGESCLPNENEFGLELCDDSDYPSQAWYFKLKKCVSRTSVKGDYAIGIIPKWPERLTAIPPRSTLLKNGVDVYEADTKRWARRVAHYKNSLKIKLGTRFVRNVMDMNALFGGFAAALKSDPVWVINVVPALKPPTLDVIFDRGLIGVYHDWCEPFSTYPRSYDLIHVASIESLIKDPASGQNRCTLVDLMVEIDRMLRPEGTVVVRDAPEVIDRVARIASAVRWKPTVYDKEPESHGREKILVATKTLWKL*

>Glyma18g45990.3   sequence type=predicted peptide   gene model=Glyma18g45990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHSNSSSSSSPSKRGHALRQWRLLDLVSGVFFFLVLLFFTMVFTPLGDSLAASGRQTLLRSGADPQQRHRLVAAIEAGGRGVEACPAADADHMPCEDPRLNSQLSREMNYYRERHCPRPEDSPLCLIPPPHGYRVPVPWPESLHKIWHSNMPYNKIADRKGHQGWMKLEGQHFIFPGGGTMFPDGAEQYIEKLGQYIPISEGVLRTALDMGCGVASFGGYMLSKNILTMSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPFTAYNASYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVIWKKPVGESCLPNENEFGLELCDDSDYPSQAWYFKLKKCVSRTSVKGDYAIGIIPKWPERLTAIPPRSTLLKNGVDVYEADTKRWARRVAHYKNSLKIKLGTRFVRNVMDMNALFGGFAAALKSDPVWVINVVPALKPPTLDVIFDRGLIGVYHDWCEPFSTYPRSYDLIHVASIESLIKDPASGQNRCTLVDLMVEIDRMLRPEGTVVVRDAPEVIDRVARIASAVRWKPTVYDKEPESHGREKILVATKTLWKL*

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