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Report for Sequence Feature Glyma18g45930

Feature Type:gene_model
Chromosome:Gm18
Start:55633146
stop:55633688
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61190AT Annotation by Michelle Graham. TAIR10: BON association protein 1 | chr3:22650837-22651373 REVERSE LENGTH=178 SoyBaseE_val: 3.00E-14ISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009612GO-bp Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0019725GO-bp Annotation by Michelle Graham. GO Biological Process: cellular homeostasis SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005543GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipid binding SoyBaseN/AISS
PF00168PFAM C2 domain JGI ISS
UniRef100_H9DXV8UniRef Annotation by Michelle Graham. Most informative UniRef hit: BAP1 n=1 Tax=Vitis vinifera RepID=H9DXV8_VITVI SoyBaseE_val: 7.00E-23ISS
UniRef100_I1N3I5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N3I5_SOYBN SoyBaseE_val: 1.00E-132ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g45930 not represented in the dataset

Glyma18g45930 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g225400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g45930.1   sequence type=CDS   gene model=Glyma18g45930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAGAAGAACCCACACCATGGAGATCACGATTATATCCGCCGAAAACCTTTGCATGAACGGGAAGCCACTAAAAGACCACCCATACGTCGTCGTTCACACGCAGTCATGCACCAAATTCTTCACAACGAGGATGCCAACGCAAGAAGAAGGTGGGAGCAAGAGCACCAACAACAACCCTTCATGGAACGACAAGTTCAGGGTGGACGATGGAGACAGCGACTGCATCACGCTGGAGGTGCAATGCAAGACGTGGTTCGGCGTTCGAAGCGTGGGAGCTGCGCGAATAGCGGTTGCTGATTTTGCGGCGGAGAAAAGCTTGCAGTTGTTGAGTTATAGGCTTTGGGATGGGAAGGGTCGGAGAAACGGGGTCATCAATTTCTCGGTGAGGGTGGTGGAGAAACCTGCGGAGTCTGAATCTTTGTGTTCGATGCATGAGGCGGAAGCACAGAGAACGATTGGTGGAAATGATGATTCTAGAGGAATTGTTACTGGGATTCCTGTTTTCTGGAATTACCCTCTCAATATTCCAAGATGA

>Glyma18g45930.1   sequence type=predicted peptide   gene model=Glyma18g45930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEARRTHTMEITIISAENLCMNGKPLKDHPYVVVHTQSCTKFFTTRMPTQEEGGSKSTNNNPSWNDKFRVDDGDSDCITLEVQCKTWFGVRSVGAARIAVADFAAEKSLQLLSYRLWDGKGRRNGVINFSVRVVEKPAESESLCSMHEAEAQRTIGGNDDSRGIVTGIPVFWNYPLNIPR*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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