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Report for Sequence Feature Glyma18g45846

Feature Type:gene_model
Chromosome:Gm18
Start:55552572
stop:55555241
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g45846
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63220AT Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:23449017-23450244 FORWARD LENGTH=147 SoyBaseE_val: 2.00E-50ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1030 KOG Predicted Ca2+-dependent phospholipid-binding protein JGI ISS
PTHR26357Panther FAMILY NOT NAMED JGI ISS
PTHR26357:SF5Panther JGI ISS
PF00168PFAM C2 domain JGI ISS
UniRef100_G7I541UniRef Annotation by Michelle Graham. Most informative UniRef hit: Elicitor-responsive protein n=1 Tax=Medicago truncatula RepID=G7I541_MEDTR SoyBaseE_val: 1.00E-63ISS
UniRef100_UPI000233EB1BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EB1B related cluster n=1 Tax=unknown RepID=UPI000233EB1B SoyBaseE_val: 7.00E-94ISS

Expression Patterns of Glyma18g45846
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g45846 not represented in the dataset
Glyma18g45846 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g45846 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g224800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g45846
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g45846
>Glyma18g45846.2   sequence type=transcript   gene model=Glyma18g45846   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGTTTTTGTATCCTTCAGGCATTTGCTGTATTTTCTAACTTCCTAAGCGAGAGTGAGTTTTGAGACAAAGATGCCTCGTGGGACGCTTGAAGTTATTCTAATCAGCGCAAAAGACCTAAAGGACAGTGATTTTTTCGGGAAAATGGATCCTTATGTGATTCTCACTTATCGCGCACAAAAGCACCGAAGCAGTGTGGCTAAAGGATCTAAACCCCGTTGGAATGAAAGCTTCCTTTTCACTGTTTCTGATAGTGTATCTGAACTTAATCTGAGGCTCATGGACCAGGATTTGTTAACTAGTGATGATTTCCTTGGCGACGCAAAAATTAATCTGGAACCAGTGTTTGCTGTGGGGAGCATTCCAGAAACTTCTTACAATGTTGTGAAGGACCAGAAGTACTGTGGGGAGATCAAGGTTGCACTCACCTTTAATCCTGAGAGAGGCAGTGGACTCGGCTATGGTGATGAATAAAGCTGTGATCTAAGGGGATGAAGGAGTCACATGATTACTAGCTGTGATGATGCACCTAAATTTCTTGGACCTAGCTATATTTCCGAATAATAAGTTGTTAAAACTTACATTAATGGTGATTCTGTACTTGAATTGGTTTCTAGACTTTTTATTTTCAACTCAAATTTACCTATTTTCAATTCTAGTGAAATTCCTTTGCCAACAAATCGTTTTCTGGCATAACTTTGTGGTATGTTTGGATTAGACTTGCGCAACACTAAAACAATTATTTCCATGTGCTGCGTGTGTTACGTGGACTTGTGTTATATATATATATATATATATATATATATATATATATAACCTTAGGTGTTGTCTCATGACATGCATGCAAAGGCTTTTT
Coding sequences of Glyma18g45846
>Glyma18g45846.1   sequence type=CDS   gene model=Glyma18g45846   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGTGGGACGCTTGAAGTTATTCTAATCAGCGCAAAAGACCTAAAGGACAGTGATTTTTTCGGGAAAATGGATCCTTATGTGATTCTCACTTATCGCGCACAAAAGCACCGAAGCAGTGTGGCTAAAGGTGCAGGATCTAAACCCCGTTGGAATGAAAGCTTCCTTTTCACTGTTTCTGATAGTGTATCTGAACTTAATCTGAGGCTCATGGACCAGGATTTGTTAACTAGTGATGATTTCCTTGGCGACGCAAAAATTAATCTGGAACCAGTGTTTGCTGTGGGGAGCATTCCAGAAACTTCTTACAATGTTGTGAAGGACCAGAAGTACTGTGGGGAGATCAAGGTTGCACTCACCTTTAATCCTGAGAGAGGCAGTGGACTCGGCTATGGTGATGAATAA

>Glyma18g45846.2   sequence type=CDS   gene model=Glyma18g45846   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGTGGGACGCTTGAAGTTATTCTAATCAGCGCAAAAGACCTAAAGGACAGTGATTTTTTCGGGAAAATGGATCCTTATGTGATTCTCACTTATCGCGCACAAAAGCACCGAAGCAGTGTGGCTAAAGGATCTAAACCCCGTTGGAATGAAAGCTTCCTTTTCACTGTTTCTGATAGTGTATCTGAACTTAATCTGAGGCTCATGGACCAGGATTTGTTAACTAGTGATGATTTCCTTGGCGACGCAAAAATTAATCTGGAACCAGTGTTTGCTGTGGGGAGCATTCCAGAAACTTCTTACAATGTTGTGAAGGACCAGAAGTACTGTGGGGAGATCAAGGTTGCACTCACCTTTAATCCTGAGAGAGGCAGTGGACTCGGCTATGGTGATGAATAA
Predicted protein sequences of Glyma18g45846
>Glyma18g45846.1   sequence type=predicted peptide   gene model=Glyma18g45846   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRGTLEVILISAKDLKDSDFFGKMDPYVILTYRAQKHRSSVAKGAGSKPRWNESFLFTVSDSVSELNLRLMDQDLLTSDDFLGDAKINLEPVFAVGSIPETSYNVVKDQKYCGEIKVALTFNPERGSGLGYGDE*

>Glyma18g45846.2   sequence type=predicted peptide   gene model=Glyma18g45846   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRGTLEVILISAKDLKDSDFFGKMDPYVILTYRAQKHRSSVAKGSKPRWNESFLFTVSDSVSELNLRLMDQDLLTSDDFLGDAKINLEPVFAVGSIPETSYNVVKDQKYCGEIKVALTFNPERGSGLGYGDE*






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