Report for Sequence Feature Glyma18g45750
Feature Type: gene_model
Chromosome: Gm18
Start: 55451916
stop: 55456853
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g45750
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G61130 AT
Annotation by Michelle Graham. TAIR10: galacturonosyltransferase 1 | chr3:22622399-22625514 FORWARD LENGTH=673
SoyBase E_val: 0 ISS
GO:0010075 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth
SoyBase N/A ISS
GO:0010289 GO-bp
Annotation by Michelle Graham. GO Biological Process: homogalacturonan biosynthetic process
SoyBase N/A ISS
GO:0016051 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
GO:0047262 GO-mf
Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity
SoyBase N/A ISS
PTHR13778 Panther
GLYCOSYL TRANSFERASE-RELATED
JGI ISS
PTHR13778:SF4 Panther
JGI ISS
PF01501 PFAM
Glycosyl transferase family 8
JGI ISS
UniRef100_G7L1F3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Alpha-1,4-galacturonosyltransferase n=1 Tax=Medicago truncatula RepID=G7L1F3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233EB18 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EB18 related cluster n=1 Tax=unknown RepID=UPI000233EB18
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g45750
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g45750
Paralog Evidence Comments
Glyma09g40260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g45750 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g224200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g45750
Coding sequences of Glyma18g45750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g45750.2 sequence type=CDS gene model=Glyma18g45750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACCCAACAACAACAGAACAAAGGGATCCCATTTTCCGCTTCTGGCCTTCCTCTTCCTCTGCCTCCTCGCGCCCCTCCTCTTCTTTTTCTTCGCATCGCCCCTTCACGATCAAGGTGATGACTCAGCTGTTTCGAGCGAAAAGGTTGCCAGATCGAAAGAATGGCAGGCATTGCAGGATCTTAAATTGCTTTTTTCAAAAGAGGTTCTTGATGTTATTGTGTCCAACACAAATGATGTGGGGCCTTTGAGCCTTGAGAATTTTAGAAAAAATAATCTGTCTGCTTCATGGAGAGTTGCTGGATTAAGGACTTCAAATGCTATGAATCAGCTCAACCAACCAGCAGACAATGTTAGAGAAGAGAAGCAAAATGGGAAGGAAGGAAGATTTTCAGTTGATCGTGCTCAGTGGACTGGCAGTCCTGCTCAGCTATCAAGAAGGCAATTAATAGAGAAAAGGAAGGAAAAACGTGCTGCTGAGTTGGTAAAACAGGATGATGAAGTAATTGTAAAACTTGAAGATTCAGCTATTGAACACTCAAAATCTGTTGATTCAGCAGTTCTAGGTAAATACAACATTTGGAGGAAAGAAAATGAGAATGAAAATGCTGATTCTACAGTACGGTTGATTCGAGACCAAATCATTATGGCTAAGGTTTACTTGAGTATTGCAAAGATGAAGAACAAGCTTCAACTGTACCAAGAACTGGAATCTCAGCTTAAAGAAAGTCAACGTGCTTTAGGTGAGGCAACTTCTGATGCTGACATGCATCACAGTGATCATGAAAAAATGAAAACTATGGGCCAAGTTCTTTCTAAGGCAAAAGAGCAACTGTATGACTGCGAGTTGGTTACTGGGAAATTGAGGGCAATGCTACAAACAGCTGATGAGCAGGTTAGAGGATTGAAGAAACAAAGCACATTCCTTAGTCAGTTGGCTGCCAAAACCATACCAGATGGAATTCACTGCCTATCTATGCGCCTTACCATAGATTACTACCTACTTCCCCTTGAAAAGAGAAAATTCCCTAGAAGTGAGAATTTGGAGAATCCTAGTCTCTATCATTATGCCCTGTTCTCGGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACCATTGTGAATGCAAAGGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCAATGTTGAAAATGTTGATGAATTTAAGTGGTTGAACTCATCCTACTGCCCAGTCTTGAGGCAGCTTGAATCTGCAACAATGAAAGAGTATTATTTCAAGGCAGGCCATCCAACTACTACTGGTGCTTCAAATCTCAAGTACAGAAATCCCAAATATCTGTCAATGCTCAACCACTTGAGATTCTATCTTCCACAAGTTTATCCAAAGTTGGATAAGATTCTTTTTCTGGATGATGACATTGTTGTCCAGAAGGATTTGACTGGATTATGGGCTGTGAATCTTAATGGAAAAGTAAATGGTGCTGTTTTAACATGCGGAGAGAGTTTTCACCGATTTGACAAGTACCTTAACTTTTCAAATCCGCATATTGCGAAAAATTTTGATCCAAATGCTTGTGGTTGGGCATACGGGATGAACATGTTTGATTTGAAGGTGTGGAAAAAGAAGGACATCACTGGCATATATCACAAGTGGCAGAATTTGAACGAAGACAGGGTGCTGTGGAAGCTGGGGACATTGCCTCCAGGGCTGATGACATTCTATGGATTAACACATCCGCTAAATAAATCATGGCACGTACTCGGTCTGGGCTACAATCCAAGTGTAGATCGTTCGGAGATCGATACTGCGGCAGTCATACACTACAATGGTAATATGAAGCCGTGGTTAGAGATAGCCATGACAAAGTATCGGTCTTACTGGACCAAATATGTCAAATTTAATCATCCCTATCTTCAGAATTGTAAGCTACGTGAATGA
Predicted protein sequences of Glyma18g45750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g45750.2 sequence type=predicted peptide gene model=Glyma18g45750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPNNNRTKGSHFPLLAFLFLCLLAPLLFFFFASPLHDQGDDSAVSSEKVARSKEWQALQDLKLLFSKEVLDVIVSNTNDVGPLSLENFRKNNLSASWRVAGLRTSNAMNQLNQPADNVREEKQNGKEGRFSVDRAQWTGSPAQLSRRQLIEKRKEKRAAELVKQDDEVIVKLEDSAIEHSKSVDSAVLGKYNIWRKENENENADSTVRLIRDQIIMAKVYLSIAKMKNKLQLYQELESQLKESQRALGEATSDADMHHSDHEKMKTMGQVLSKAKEQLYDCELVTGKLRAMLQTADEQVRGLKKQSTFLSQLAAKTIPDGIHCLSMRLTIDYYLLPLEKRKFPRSENLENPSLYHYALFSDNVLAASVVVNSTIVNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATINVENVDEFKWLNSSYCPVLRQLESATMKEYYFKAGHPTTTGASNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTGLWAVNLNGKVNGAVLTCGESFHRFDKYLNFSNPHIAKNFDPNACGWAYGMNMFDLKVWKKKDITGIYHKWQNLNEDRVLWKLGTLPPGLMTFYGLTHPLNKSWHVLGLGYNPSVDRSEIDTAAVIHYNGNMKPWLEIAMTKYRSYWTKYVKFNHPYLQNCKLRE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
