Report for Sequence Feature Glyma18g45690
Feature Type: gene_model
Chromosome: Gm18
Start: 55410423
stop: 55412810
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g45690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18030 AT
Annotation by Michelle Graham. TAIR10: HAL3-like protein A | chr3:6167883-6168629 REVERSE LENGTH=209
SoyBase E_val: 6.00E-75 ISS
GO:0015937 GO-bp
Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process
SoyBase N/A ISS
GO:0042538 GO-bp
Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004633 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphopantothenoylcysteine decarboxylase activity
SoyBase N/A ISS
GO:0010181 GO-mf
Annotation by Michelle Graham. GO Molecular Function: FMN binding
SoyBase N/A ISS
KOG0672
KOG
Halotolerance protein HAL3 (contains flavoprotein domain)
JGI ISS
PTHR14359 Panther
PHOSPHOPENTOTHENOYLCYSTEINE DECARBOXYLASE
JGI ISS
PTHR14359:SF12 Panther
PHOSPHOPENTOTHENOYLCYSTEINE DECARBOXYLASE
JGI ISS
PF02441 PFAM
Flavoprotein
JGI ISS
UniRef100_B9SJW3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphopentothenoylcysteine decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9SJW3_RICCO
SoyBase E_val: 4.00E-74 ISS
UniRef100_I1N3H3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N3H3_SOYBN
SoyBase E_val: 5.00E-148 ISS
Expression Patterns of Glyma18g45690
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g45690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g223700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g45690
Coding sequences of Glyma18g45690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g45690.1 sequence type=CDS gene model=Glyma18g45690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTGCTCAGATTCTGCCAGTGTTAAAGCAAAGTCTGAGGCAAAACTTGGTGTTCCGAGGAAGCCTCGAGTTCTACTTGCAGCTTGTGGATGCGTTGCTGCTGTAAAATTTGGGCTTCTTTGTCATTGTTTTATAGAATGGGCAGACATAAGAGCTGTTGTCACACAATCATCGTTGCGTTTTATTGATAGAGCATCAATTCCCAATGGTGTATTTGTTTATTATGATGAGTATGAATGGTATAGTTGGAAGAGAATGGACATTGAGCTTCTTGAATGGGCTGATATCATGGTCATTGCTCCGTTATCGGCACATACCCTTGCCAAGATTGCAGGAGGATACTGTGACAATCTACTGACAGGTACTGTGAGAGGATGGGACCCGAGAAAGAAGCCAATATTTGTTGCACCATCGATGAACCCTTTCATGTGGAAAAATCCTTCGACAGAAAAGCATTGCAAAAAGTGCATTGATGAGCTTGGCATTTCTCTCATCCCACCTATTTCACAGAGGTCAGGTGAAGGGGAATATAGTACTGGTGCAATGGCTGAACCTTCTGACATTTCCCGCAATGTTATGATCTCTTATTCGAAGTTTCAGAAAAAGAATGTTGGTGGGGTTTAG
Predicted protein sequences of Glyma18g45690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g45690.1 sequence type=predicted peptide gene model=Glyma18g45690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDCSDSASVKAKSEAKLGVPRKPRVLLAACGCVAAVKFGLLCHCFIEWADIRAVVTQSSLRFIDRASIPNGVFVYYDEYEWYSWKRMDIELLEWADIMVIAPLSAHTLAKIAGGYCDNLLTGTVRGWDPRKKPIFVAPSMNPFMWKNPSTEKHCKKCIDELGISLIPPISQRSGEGEYSTGAMAEPSDISRNVMISYSKFQKKNVGGV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
