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Report for Sequence Feature Glyma18g45636

Feature Type:gene_model
Chromosome:Gm18
Start:55346068
stop:55349021
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g45636
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18030AT Annotation by Michelle Graham. TAIR10: HAL3-like protein A | chr3:6167883-6168629 REVERSE LENGTH=209 SoyBaseE_val: 4.00E-95ISS
GO:0015937GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004633GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphopantothenoylcysteine decarboxylase activity SoyBaseN/AISS
GO:0010181GO-mf Annotation by Michelle Graham. GO Molecular Function: FMN binding SoyBaseN/AISS
KOG0672 KOG Halotolerance protein HAL3 (contains flavoprotein domain) JGI ISS
PTHR14359Panther PHOSPHOPENTOTHENOYLCYSTEINE DECARBOXYLASE JGI ISS
PTHR14359:SF12Panther PHOSPHOPENTOTHENOYLCYSTEINE DECARBOXYLASE JGI ISS
PF02441PFAM Flavoprotein JGI ISS
UniRef100_G7LCR5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphopantothenoylcysteine decarboxylase n=1 Tax=Medicago truncatula RepID=G7LCR5_MEDTR SoyBaseE_val: 7.00E-96ISS
UniRef100_UPI000233E127UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E127 related cluster n=1 Tax=unknown RepID=UPI000233E127 SoyBaseE_val: 5.00E-151ISS

Expression Patterns of Glyma18g45636
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g45636 not represented in the dataset
Glyma18g45636 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45636
ParalogEvidenceComments
Glyma09g40320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45636 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g223400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g45636
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g45636
>Glyma18g45636.2   sequence type=transcript   gene model=Glyma18g45636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGACTCTCACATGTTACAACACAAGCGCGATTCATAGGTTCCTCTGAGAATTCAAAAATCTTGAACTTGGCATGTCTCTGTTCTGCTTCTGATAATCTGATTCGCAATGCTGCGGTAAAGACAAAGAGCGATTGGTGAACTCACAAGATATTGTTGAAATCTGTTGGCGATGGATTGCTCTGATCCAGCAAGTAAAAAGGCAAAAGCTGAGGCAGGGTGTGCTATTACAAGGAAGCCTCGGATTCTACTTGGTGCTTGTGGAAGTGTTGGTGCTGTGAAATTTGGGCATGTTTGTCGTTGTTTTGCAGAATGGGCAGAAGTAAGGGCGGTGGTCACAAAATCATCCTTGTGTTTTATTGATGAACAAACATTTCCCAAGGATGTTGTTGTATTTTGTGATAAGCATGAGTGGCTTACATGGAAAAAGCTAGGTGATCCTGTGATGCATATTGAGCTTCTTAGATGGGCTGAAATAATGGTCATTGCTCCATTGTCAGCAAATACTCTTGGCAAGATAGCTGGAGGGTTGTGTGACAATCTTCTGACATGTATTGTGAGAGCATGGGACTACAGCAAGCCACTGTTTGTTGCACCATCCATGAACTCTATTGTATGGAGAAACCCTTTCACCGAACGGCATTGCACCGAGATTGATGAGCTTGGCATCACTCTCATCCCTCCTGTTACACATACAACAGCTAGTGGGGATTTTGAGCATGGCGCAATGGCTGAACCTTCAACCATTTCCTCGACTGTGAGAGTTTTTTATGTGTTAAAGATGCAGAAAAAGTAGTAGGTCAGGTTTAGCAATTTTGATCATTATTGTGCAAGTATGGATGGCTGTTGGTTAGCCAGGACCCTCCTTTGTCTTGGGTCCTTGTTTTATCTTTTATTAGTTGATTTTTTTTAATCGGCAAATGGTAGTTGTTGGTTTTTTTAGAGAGGAATTCAAATTCAGAACCTCTTCTTTCCCCAGTTGATCTAATGTGATCATATTTGATTTGATGATAGTTTCATTGAGCAGTCTCGTTTATGTTTCCTAGGGTATTGCCAACAGAACATTAATGACAGATGCTAGATGGTAAAAGCAACTCCAATGTAGTTAAACAACTTGGT

>Glyma18g45636.3   sequence type=transcript   gene model=Glyma18g45636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTATAGGATAGTAGAAACTAAAAACAAGTAAAACTTATGCTTCCTTTGTATATGTTCAATTACTGAGTTTTTCTTTTTTCTTTTATTTTGTCGAAACAAAAGTGAGAGAAATACTTGATCTTCAAGCTGCACTGAAAATGTATGAAACCTATGACTAGACTCTCTTTCCCTCTCTGATTGACATCTTGAATGCTTAAAAATTTGTAAATTTGTTGATTCTGGTAATGTGGACACTCATCTAAACTCGTCAGAAATGACTCACGATTCTTCTCATTCCTGATAAATGGTATATTGTTGAAATCTGTTGGCGATGGATTGCTCTGATCCAGCAAGTAAAAAGGCAAAAGCTGAGGCAGGGTGTGCTATTACAAGGAAGCCTCGGATTCTACTTGGTGCTTGTGGAAGTGTTGGTGCTGTGAAATTTGGGCATGTTTGTCGTTGTTTTGCAGAATGGGCAGAAGTAAGGGCGGTGGTCACAAAATCATCCTTGTGTTTTATTGATGAACAAACATTTCCCAAGGATGTTGTTGTATTTTGTGATAAGCATGAGTGGCTTACATGGAAAAAGCTAGGTGATCCTGTGATGCATATTGAGCTTCTTAGATGGGCTGAAATAATGGTCATTGCTCCATTGTCAGCAAATACTCTTGGCAAGATAGCTGGAGGGTTGTGTGACAATCTTCTGACATGTATTGTGAGAGCATGGGACTACAGCAAGCCACTGTTTGTTGCACCATCCATGAACTCTATTGTATGGAGAAACCCTTTCACCGAACGGCATTGCACCGAGATTGATGAGCTTGGCATCACTCTCATCCCTCCTGTTACACATACAACAGCTAGTGGGGATTTTGAGCATGGCGCAATGGCTGAACCTTCAACCATTTCCTCGACTGTGAGAGTTTTTTATGTGTTAAAGATGCAGAAAAAGTAGTAGGTCAGGTTTAGCAATTTTGATCATTATTGTGCAAGTATGGATGGCTGTTGGTTAGCCAGGACCCTCCTTTGTCTTGGGTCCTTGTTTTATCTTTTATTAGTTGATTTTTTTTAATCGGCAAATGGTAGTTGTTGGTTTTTTTAGAGAGGAATTCAAATTCAGAACCTCTTCTTTCCCCAGTTGATCTAATGTGATCATATTTGATTTGATGATAGTTTCATTGAGCAGTCTCGTTTATGTTTCCTAGGGTATTGCCAACAGAACATTAATGACAGATGCTAGATGGTAAAAGCAACTCCAATGTAGTTAAACAACTTGGT
Coding sequences of Glyma18g45636
>Glyma18g45636.1   sequence type=CDS   gene model=Glyma18g45636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTGCTCTGATCCAGCAAGTAAAAAGGCAAAAGCTGAGGCAGGGTGTGCTATTACAAGGAAGCCTCGGATTCTACTTGGTGCTTGTGGAAGTGTTGGTGCTGTGAAATTTGGGCATGTTTGTCGTTGTTTTGCAGAATGGGCAGAAGTAAGGGCGGTGGTCACAAAATCATCCTTGTGTTTTATTGATGAACAAACATTTCCCAAGGATGTTGTTGTATTTTGTGATAAGCATGAGTGGCTTACATGGAAAAAGCTAGGTGATCCTGTGATGCATATTGAGCTTCTTAGATGGGCTGAAATAATGGTCATTGCTCCATTGTCAGCAAATACTCTTGGCAAGATAGCTGGAGGGTTGTGTGACAATCTTCTGACATGTATTGTGAGAGCATGGGACTACAGCAAGCCACTGTTTGTTGCACCATCCATGAACTCTATTGTATGGAGAAACCCTTTCACCGAACGGCATTGCACCGAGATTGATGAGCTTGGCATCACTCTCATCCCTCCTGTTACACATACAACAGCTAGTGGGGATTTTGAGCATGGCGCAATGGCTGAACCTTCAACCATTTCCTCGACTGTGAGAGTTTTTTATGTGTTAAAGATGCAGAAAAAGTAG

>Glyma18g45636.2   sequence type=CDS   gene model=Glyma18g45636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTGCTCTGATCCAGCAAGTAAAAAGGCAAAAGCTGAGGCAGGGTGTGCTATTACAAGGAAGCCTCGGATTCTACTTGGTGCTTGTGGAAGTGTTGGTGCTGTGAAATTTGGGCATGTTTGTCGTTGTTTTGCAGAATGGGCAGAAGTAAGGGCGGTGGTCACAAAATCATCCTTGTGTTTTATTGATGAACAAACATTTCCCAAGGATGTTGTTGTATTTTGTGATAAGCATGAGTGGCTTACATGGAAAAAGCTAGGTGATCCTGTGATGCATATTGAGCTTCTTAGATGGGCTGAAATAATGGTCATTGCTCCATTGTCAGCAAATACTCTTGGCAAGATAGCTGGAGGGTTGTGTGACAATCTTCTGACATGTATTGTGAGAGCATGGGACTACAGCAAGCCACTGTTTGTTGCACCATCCATGAACTCTATTGTATGGAGAAACCCTTTCACCGAACGGCATTGCACCGAGATTGATGAGCTTGGCATCACTCTCATCCCTCCTGTTACACATACAACAGCTAGTGGGGATTTTGAGCATGGCGCAATGGCTGAACCTTCAACCATTTCCTCGACTGTGAGAGTTTTTTATGTGTTAAAGATGCAGAAAAAGTAG

>Glyma18g45636.3   sequence type=CDS   gene model=Glyma18g45636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTGCTCTGATCCAGCAAGTAAAAAGGCAAAAGCTGAGGCAGGGTGTGCTATTACAAGGAAGCCTCGGATTCTACTTGGTGCTTGTGGAAGTGTTGGTGCTGTGAAATTTGGGCATGTTTGTCGTTGTTTTGCAGAATGGGCAGAAGTAAGGGCGGTGGTCACAAAATCATCCTTGTGTTTTATTGATGAACAAACATTTCCCAAGGATGTTGTTGTATTTTGTGATAAGCATGAGTGGCTTACATGGAAAAAGCTAGGTGATCCTGTGATGCATATTGAGCTTCTTAGATGGGCTGAAATAATGGTCATTGCTCCATTGTCAGCAAATACTCTTGGCAAGATAGCTGGAGGGTTGTGTGACAATCTTCTGACATGTATTGTGAGAGCATGGGACTACAGCAAGCCACTGTTTGTTGCACCATCCATGAACTCTATTGTATGGAGAAACCCTTTCACCGAACGGCATTGCACCGAGATTGATGAGCTTGGCATCACTCTCATCCCTCCTGTTACACATACAACAGCTAGTGGGGATTTTGAGCATGGCGCAATGGCTGAACCTTCAACCATTTCCTCGACTGTGAGAGTTTTTTATGTGTTAAAGATGCAGAAAAAGTAG
Predicted protein sequences of Glyma18g45636
>Glyma18g45636.1   sequence type=predicted peptide   gene model=Glyma18g45636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDCSDPASKKAKAEAGCAITRKPRILLGACGSVGAVKFGHVCRCFAEWAEVRAVVTKSSLCFIDEQTFPKDVVVFCDKHEWLTWKKLGDPVMHIELLRWAEIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPSMNSIVWRNPFTERHCTEIDELGITLIPPVTHTTASGDFEHGAMAEPSTISSTVRVFYVLKMQKK*

>Glyma18g45636.2   sequence type=predicted peptide   gene model=Glyma18g45636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDCSDPASKKAKAEAGCAITRKPRILLGACGSVGAVKFGHVCRCFAEWAEVRAVVTKSSLCFIDEQTFPKDVVVFCDKHEWLTWKKLGDPVMHIELLRWAEIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPSMNSIVWRNPFTERHCTEIDELGITLIPPVTHTTASGDFEHGAMAEPSTISSTVRVFYVLKMQKK*

>Glyma18g45636.3   sequence type=predicted peptide   gene model=Glyma18g45636   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDCSDPASKKAKAEAGCAITRKPRILLGACGSVGAVKFGHVCRCFAEWAEVRAVVTKSSLCFIDEQTFPKDVVVFCDKHEWLTWKKLGDPVMHIELLRWAEIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPSMNSIVWRNPFTERHCTEIDELGITLIPPVTHTTASGDFEHGAMAEPSTISSTVRVFYVLKMQKK*






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