SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g45446

Feature Type:gene_model
Chromosome:Gm18
Start:55215785
stop:55231004
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g45446
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20070AT Annotation by Michelle Graham. TAIR10: titan9 | chr3:7004950-7006625 REVERSE LENGTH=282 SoyBaseE_val: 3.00E-69ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009960GO-bp Annotation by Michelle Graham. GO Biological Process: endosperm development SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1L6T0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6T0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LJZ4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein titan9 n=1 Tax=Arabidopsis thaliana RepID=Q9LJZ4_ARATH SoyBaseE_val: 1.00E-66ISS

Expression Patterns of Glyma18g45446
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g45446 not represented in the dataset
Glyma18g45446 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45446
ParalogEvidenceComments
Glyma09g40400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45446 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g222500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g45446
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g45446
>Glyma18g45446.2   sequence type=transcript   gene model=Glyma18g45446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTCATGAATACCTAGATATAAGTGGGTCAAGCTAATTAGAAGGAAAAGGAGGAAATAGTGAAAGACGGGTGCGTACGTCGTTCCAAGTAAATCACTTTGTCGAGCCCTAATTTTGAATTTGTGCGCCATTCCTAAAACAGTGCAGTGAAAATCACGTATTTGCGATGGAGATTCTGTATTCGAAGCTCTACGACAAGTACACCAAACTCAAGTCTAAAAAACTCTCCGATTTGGATCACATAAACAAAGAACAAGAAGTTAAATTCGTGAATTACTTGACGGGTACGTTTCTTTCCATTCCTTTCGGCGTGAATTCTCGGAAGAACGACGAACGAACGTGTTCTGAATTTCGAACCCTTTGAGTGTTGCAGCTGCGGAAGAGTTGATAGAGCACTTGAAGAGCGAAAAGGAAGGACTTCTTGAACAAGTCAATGAGTTGAGAACTGAATTGGCTTCACTTAGGGCTGCCAAAGAGAAAGAGGTTGCGGATTATCAGAAGCTTTTTATGGAGGAAAAAGAGAAAAATGAAACTCTTTCTGAAGAAGTTGAGAAATTGCTAAAGCTTCACCAGGAAAGAACATGTCATGATTTATATAATAACAGCAAGATCAAGACCGTAGATGATCAGTTTAAGGCAAACTCCAACAGCTCATCTATAAGAATGACAAGAAAACGTACAAGGCAGATTGCTTTGGAGAAAGAAACAATTCCATCTTTTGAAAATGAAGGTAATTCTGTGGAGAGAGAATCAACACAAAATGCTTGCAAGGAGAGTGCTTCTGATAAGCTGCTGGAGTGCTGTACCAAGGCTAATGATCAATCTGGCATTGGTTTACATGAAAGTGGTCATGGTAACGGGCTTATTCAAGTTCTTTTTGAGTATGCACTGGGCATGAAATTATCCACTGACTATCAAACAGGACGAATATGCATGTCTGCTCTGCATCAATCAAGCGGTTACTCCTTCAGTTTATCGTGGATTGGCAAATCACCAGGAGAGGAGGAAGCAGAGCTGCTGTACCATGTTATATCTCTAGGCACATTTGAAAGAGTGGCACCGGAATGGATGAAGGAGGACATCATGTTCAGCCCTAGCATGTGCCCCATCTTCTTTGAAAGGATATCTCGTGTTATCAAGTTGAACCACTAGTGTTCTTCTGTAGCATTGATCCGCCGAATCTGTATTTACTGTACATATTAACTGCTTAATTTTTATTTGGAGAACACTAAGTTGATTTTTGCGTGTAGATTAGTTTGTTTCTCTCCAATCCCATTTCATATTCCATTAGCTAATTCAAAGAATCTGTAAGGTTATTTGGAAGAGCTTGTATAGCTTAGCTCGTTGTGTGCTACAGCAAGAATTTAATTAAGCTTATGAAGGGAACGTGATTTTAAGAAAGGGACTTATATTTCTTCGCAAGTTTTTTTTAACCTAGTTTTAGACAAGTTTTGAGGTAAATGCTATGAAAAGTTTATATGATAGTAGTAAGCTCTTGTAATTAATTTGCTTATTTCAATACACTCGAAGGGTCACATTTATTGTTAAAGGAGAAAATCATGATTACTTTCGCTTCTTAACATGATGATTTTTAACTTACCATGATGATATAAGGATGAAAAAACTAGTTAGTCTGTGAGTCTGTTGTAAAAAGAGGTTTTTTTATGTAGCATTGAATTGATACCAATACTGCATGATGATAGTGGCGTTTTCAAGTGTATTAT
Coding sequences of Glyma18g45446
>Glyma18g45446.1   sequence type=CDS   gene model=Glyma18g45446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTCTGTATTCGAAGCTCTACGACAAGTACACCAAACTCAAGTCTAAAAAACTCTCCGATTTGGATCACATAAACAAAGAACAAGAAGTTAAATTCGTGAATTACTTGACGGCTGCGGAAGAGTTGATAGAGCACTTGAAGAGCGAAAAGGAAGGACTTCTTGAACAAGTCAATGAGTTGAGAACTGAATTGGCTTCACTTAGGGCTGCCAAAGAGAAAGAGGTTGCGGATTATCAGAAGCTTTTTATGGAGGAAAAAGAGAAAAATGAAACTCTTTCTGAAGAAGTTGAGAAATTGCTAAAGCTTCACCAGGAAAGAACATGTCATGATTTATATAATAACAGCAAGATCAAGACCGTAGATGATCAGTTTAAGGCAAACTCCAACAGCTCATCTATAAGAATGACAAGAAAACGTACAAGGCAGATTGCTTTGGAGAAAGAAACAATTCCATCTTTTGAAAATGAAGGTAATTCTGTGGAGAGAGAATCAACACAAAATGCTTGCAAGGAGAGTGCTTCTGATAAGCTGCTGGAGTGCTGTACCAAGGCTAATGATCAATCTGGCATTGGTTTACATGAAAGTGGTCATGGTAACGGGCTTATTCAAGTTCTTTTTGAGTATGCACTGGGCATGAAATTATCCACTGACTATCAAACAGGACGAATATGCATGTCTGCTCTGCATCAATCAAGCGGTTACTCCTTCAGTTTATCGTGGATTGGCAAATCACCAGGAGAGGAGGAAGCAGAGCTGCTGTACCATGTTATATCTCTAGGCACATTTGAAAGAGTGGCACCGGAATGGATGAAGGAGGACATCATGTTCAGCCCTAGCATGTGCCCCATCTTCTTTGAAAGGATATCTCGTGTTATCAAGTTGAACCACTAG

>Glyma18g45446.2   sequence type=CDS   gene model=Glyma18g45446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAAAGAGAAAAATGAAACTCTTTCTGAAGAAGTTGAGAAATTGCTAAAGCTTCACCAGGAAAGAACATGTCATGATTTATATAATAACAGCAAGATCAAGACCGTAGATGATCAGTTTAAGGCAAACTCCAACAGCTCATCTATAAGAATGACAAGAAAACGTACAAGGCAGATTGCTTTGGAGAAAGAAACAATTCCATCTTTTGAAAATGAAGGTAATTCTGTGGAGAGAGAATCAACACAAAATGCTTGCAAGGAGAGTGCTTCTGATAAGCTGCTGGAGTGCTGTACCAAGGCTAATGATCAATCTGGCATTGGTTTACATGAAAGTGGTCATGGTAACGGGCTTATTCAAGTTCTTTTTGAGTATGCACTGGGCATGAAATTATCCACTGACTATCAAACAGGACGAATATGCATGTCTGCTCTGCATCAATCAAGCGGTTACTCCTTCAGTTTATCGTGGATTGGCAAATCACCAGGAGAGGAGGAAGCAGAGCTGCTGTACCATGTTATATCTCTAGGCACATTTGAAAGAGTGGCACCGGAATGGATGAAGGAGGACATCATGTTCAGCCCTAGCATGTGCCCCATCTTCTTTGAAAGGATATCTCGTGTTATCAAGTTGAACCACTAG
Predicted protein sequences of Glyma18g45446
>Glyma18g45446.1   sequence type=predicted peptide   gene model=Glyma18g45446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEILYSKLYDKYTKLKSKKLSDLDHINKEQEVKFVNYLTAAEELIEHLKSEKEGLLEQVNELRTELASLRAAKEKEVADYQKLFMEEKEKNETLSEEVEKLLKLHQERTCHDLYNNSKIKTVDDQFKANSNSSSIRMTRKRTRQIALEKETIPSFENEGNSVERESTQNACKESASDKLLECCTKANDQSGIGLHESGHGNGLIQVLFEYALGMKLSTDYQTGRICMSALHQSSGYSFSLSWIGKSPGEEEAELLYHVISLGTFERVAPEWMKEDIMFSPSMCPIFFERISRVIKLNH*

>Glyma18g45446.2   sequence type=predicted peptide   gene model=Glyma18g45446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKEKNETLSEEVEKLLKLHQERTCHDLYNNSKIKTVDDQFKANSNSSSIRMTRKRTRQIALEKETIPSFENEGNSVERESTQNACKESASDKLLECCTKANDQSGIGLHESGHGNGLIQVLFEYALGMKLSTDYQTGRICMSALHQSSGYSFSLSWIGKSPGEEEAELLYHVISLGTFERVAPEWMKEDIMFSPSMCPIFFERISRVIKLNH*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo