Glyma18g45440 - SoyBase

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Report for Sequence Feature Glyma18g45440

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55207762
stop:	55215310
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45500	AT	Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein \| chr2:18749973-18752636 REVERSE LENGTH=491	SoyBase	E_val: 0	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0740	KOG	AAA+-type ATPase	JGI		ISS
PTHR23074	Panther	AAA ATPASE	JGI		ISS
PTHR23074:SF10	Panther	AAA-FAMILY ATPASE	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF04212	PFAM	MIT (microtubule interacting and transport) domain	JGI		ISS
UniRef100_G7L0E6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spastin n=1 Tax=Medicago truncatula RepID=G7L0E6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E126	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E126 related cluster n=1 Tax=unknown RepID=UPI000233E126	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45440

Paralog	Evidence	Comments
Glyma09g40410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g222400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g45440

Limit To All Plant Sequences

>Glyma18g45440.1   sequence type=CDS   gene model=Glyma18g45440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCCTGCAGGGTATCGTTGATTCCTTCAACTCCATCTTCATACCCGATAACAACAATTATCACGACACCAATTCTCCTTCTTCTTCTTCTTCCTCAACGAATCGAATGGAAGCTTCTCCTCCTCCTCCTCCTCTTCCTCCTTCGGTTTCGAACGAGCGCGTTGCCTACAAGCTCAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCGAAGGGCGTTAGGGCAGAGGAATGGGGCTTGATCGACGATGCGCTTCTCCACTACCGTAACGCGCACTCGATCCTCCTCGAAGCTAATTCAACTCCCGTTCCGTCCTACATCACTTCCAGTGAACAGCAGAAGGTGCAATCTTATCGAGAGAAGATATCCAAATGGCAGAGTCAGGTTTCTGAGAGATTGCAGACTCTCGCTAGACGAGCTGGTAGCTCATCTGCTAATCAGAGCACCTCAAAACTTGCCCAAACTGTGGCAGTTCCGATTAAGCCATCGAGTACTAGAAAAAATGTGTTACAAAAGCCCCCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGGGTCTGGTGTAAATTATGATGACAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAAATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTTACGGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCCCCTGGTAATGGAAAAACAATGCTTGCCAAAGCAGTGGCTTCAGAATCACAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACATACCTTTACCAGATGAAAATGTTCGGAAGCTACTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAGGCTTGTAAAGGAGACCGAAGGATATTCTGGCAGTGATCTACAAGCCTTGTGTGAAGAAGCCGCAATGATGCCCATTAGAGAGCTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGTAAGAGGACTGAGGTACGAGGATTTTAAGAAGGCAATGGCTACCATTAGGCCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGTTGGAATGAGGATTTTGGTTCTAATTGA

Predicted protein sequences of Glyma18g45440

Limit To All Plant Sequences

>Glyma18g45440.1   sequence type=predicted peptide   gene model=Glyma18g45440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFLQGIVDSFNSIFIPDNNNYHDTNSPSSSSSSTNRMEASPPPPPLPPSVSNERVAYKLKGYFDLATQEIAKGVRAEEWGLIDDALLHYRNAHSILLEANSTPVPSYITSSEQQKVQSYREKISKWQSQVSERLQTLARRAGSSSANQSTSKLAQTVAVPIKPSSTRKNVLQKPPQRTGQVNKVGSPKSSQGSGVNYDDKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMATIRPSLNKSKWEELERWNEDFGSN*

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