Glyma18g45400 - SoyBase

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Report for Sequence Feature Glyma18g45400

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55173399
stop:	55183090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45460	AT	Annotation by Michelle Graham. TAIR10: SMAD/FHA domain-containing protein \| chr2:18737054-18741690 REVERSE LENGTH=902	SoyBase	E_val: 0	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR12348	Panther	TSC22	JGI		ISS
PTHR12348:SF12	Panther	FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FH	JGI		ISS
PF00498	PFAM	FHA domain	JGI		ISS
UniRef100_F4IG61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SMAD/FHA domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4IG61_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EB0F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB0F related cluster n=1 Tax=unknown RepID=UPI000233EB0F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45400

Paralog	Evidence	Comments
Glyma09g40440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g221900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g45400

Limit To All Plant Sequences

>Glyma18g45400.2   sequence type=CDS   gene model=Glyma18g45400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAGGTCCTTCTCAATGGCGAGCCACCTTCTATGTCCACCACCAAACCTTCAACCTCAGCACTCCTGTCTCAGTTACATGCAACTTTGCTCACGATTCCTTCACCAAACAACGCCACAAAATCTATGCATTCACACTGCCAACACTCTTGTCCTTCCTTCAAGTTCAAAGTGCAGGGAACACAGCTTCCCCGTTCCAATTGCACCCTTTGACCACAAAAGCTTCTGTGTTTGGCATACTATGCTACTACTTGACCTTCAGGGCATGGCTATGTTTTCCCTTATATGCCACTCAGTTAAGCATTGCCATGGCACTCTTTGGCTCGTTTTCCTTGGCTTCTTTGGTGTCACTTCTTCTTTCTGACTCGTGGTGGCACATCAAGTACATGCTTTATTTTTTACTTGTGGTGGTTGAGTTGCATCAAATGAGACGGGGACAAAAAAAGTTCCAAAGCTTCCAATGCAAGCTTAAGGTTAGTTTGTTGTTCTTTTCGTGCGTGAGTGAGTGCGTGACCCATCATCAAAGTGAACACACACTTACCAGTACAGTTCACAGTTCCCAGTTCCCAGTAGTGGTGGAAGCGCGCGAAGACCGAAGAGGGAAAATTCAGGTAATTAGGGTTTTGAAAGTGGCGATGGAAGAGGCAAAAGTGGAAACTCCGATGACAGCGTCGAGAGGCAACATTGGCAGTGGTGGTGACAATTGCTCGCAGAGTTTGAGCCCTAGAGCGCGCATTGTCTCCGTCGCCTCCAACATCGCCTCGCAGCCTCTTCACAACTCCGATCCTCAAGTTTGGGGCGTTCTCACTGCTATCTCCAACAATGCCCGCAAAAGGCACCAGGGAATTAACATTTTATTAACTGCTGATGAGCATCGTATTGGTCGATTGGTAGAGGATGTGCGTTTCCAGATTGATTCAAATTCTGTTAGTGCAAATCATTGCCGAATATACAGGATGAAAGTTACTAATGAAAATATGGAGAATACCACATCAATATTCTTGAAAGATACAAGCACAAATGGAACTTACCTTAACTGGGAGAAATTGAAAAAGAATGGTGCTGCTGTGAAAGTCTGCCATGGTGATATTATATCATTTGCTGCTCCTCCGCAGCATGATCTGGCATTTGCTTTTGTATATCGAGAGGTGCTTGTGTCCAGCCCCATGCCAGATAATGCAGTTGCTAAACGAAAAGCTGAGGATTTTGTTTCTGAAAACAAGAGATTGAAAGGTTTAGGCATTGGTGCTCCTGAGGGTCCCATATCTCTAGATGATTTTCGAAGTCTTCAAAGATCAAACATGGAATTGAGAAAGCAATTGGAGAATCAGGTGGTTACAATTGATACTTTGCGTAGTGACAATCGTGCAGCTGTTGAACGCCATGAAAGTGAATTAAAATCAGTCAAAGAGTCAGTTGAAAAATGTTACCTTGATCAATTAAAAGAATTACAGCAAATGGTGGATCTCAAACAGAAGGAATTAGGGGATCTTAACAGAGCATCTGCTGAACAAAAACATGCCATTGAAGACCTTGATGAGAGGCTTAGTGCTTCTATACAGTCATGTGCTGAAGCAAATTCTATAATAAGTAGTCAAAAGGTAAATATAGCTGAACTGAAGGAACAATTGGATGAAGAGCGGACTCAACGAAAAGAAGAGCGAGAAAAGGCTGCTGGTGATTTAAAAGCTGCTGTTCATAGAGCCCAGTCTGAGGCTCAGGAGGAATTAAAACGACTCTCAGATGCTTCCTTAAGAAGAGAAAGAGAGCTACAAGAAACAATAAATAAGCTACAGGAGTCAGAGAGAGAAATGTCTCTGCTGGTTGAAACCTTGAGGTTCAAACTGGAAGATACCAGGCAAAAATTGGTTGCATCTGATAATAAGGTTCGCCAATTGGAGACCCAAGTACATGAAGAGAAGCTTGCCACTGAAAATGAGATGAAGAAAGTAGAACTTGAACAACAGGAAACAAGAAGATTAAGGAAAGAGCTTGAGAGCGAAAAGCAGGCAGCTCGAGAAGAAGCTTGGGCTAAAGTTTCTGTTCTTGAGCTTGAGATAAATGCTGCAATGCGAGATCTTGATTTTGAGAGGCGGAGGTTAAAAGGTGCCAGGGAAAGACTTATGCTTCGGGAAACACAGCTTCGAGCATTTTATTCCACTACTGAAGAGATACAAATATTGTTTGCTAAGCAACAGGAACAATTGAAGTCTATGCAGAGAACTCTAGAAGATGATGAAAATTATGAGAATACTTCTGTAGAAATGGATGGAGTCATTGTTGGAACCTCTGGCAGAGAAAAAGAAGTTGATGGATTCCATGGCCAAAATTGTGCCAAGGCAGGGTCAACTACTTCTGCACAAAGGCTCAACGTAGTTCATGTTGAAACGTCGAGCAATGAAGCAAGTGTCACTGAGAAGCATGACTGTGATATAAGAAGTGAAGAATGTCAAAATACACAGGAGGGAGAATTCACCAGTGCTGATCATGACCATAGTGTTAGAGGCGGCTTTGGTTCTGATATTGATGGTGTCGACACAGCAACTATGGTGGAGGGAGATGCTGCTGTAGGCACTGAGCGAGTTCTTGAAACTGAAAGTCCTGTAAATCAGGGTGAACAGAATATTGATTTGAACAAGTGTTTAGATGGGGACACAATGCAAATTGATGATGATGATAACAACGTACAAGAAACCGAGGACCATGCTCAAAAAACTTCTCGTGAAGGTTTACATCACTCACAATCAAATAATCCTTCAGACACTCAAAAGACCATTGAGGATACAGAAGCTGGAGGCTTAATCAGAACAGCGGACCTCTTAACTTCTGAAGTTGCTGGTAGTTGGGCTTGCAGTACCGCCCCTTCCACGCACGGAGAAAATGAATCTCCAAGAAGCAGAGATAATAATGAAGGTTCAGGAGCATTGCATGATTCAAATATCTTAGTGGCTGAGAGTCAGAACACAACTTCTGATGCTGCAGTTGCCAGAGAGAATGAAAGACAAGCACTAAGTGAGATGATTGGCATTGTTGCTCCCGATTTGAGGGAGCAATTTGGAGGTTCTGCATATGATTGTGACCAAGAGAGAGAAGACCATGGTGGTTCATCTGACTCAGATACTGAGAGTTGTAGCAACACTAGCATTGAAAACATAGCCAAAGCAAAGGGTGGAACGATATCTGATGAAGAAACTCAGCTTAGTGACCATGATGATGAGGATCAAAAGCAGGATGATGCCATGGATGATGATGATGATGATGAAGACACTGAAGAAGATTGA

Predicted protein sequences of Glyma18g45400

Limit To All Plant Sequences

>Glyma18g45400.2   sequence type=predicted peptide   gene model=Glyma18g45400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGPSQWRATFYVHHQTFNLSTPVSVTCNFAHDSFTKQRHKIYAFTLPTLLSFLQVQSAGNTASPFQLHPLTTKASVFGILCYYLTFRAWLCFPLYATQLSIAMALFGSFSLASLVSLLLSDSWWHIKYMLYFLLVVVELHQMRRGQKKFQSFQCKLKVSLLFFSCVSECVTHHQSEHTLTSTVHSSQFPVVVEAREDRRGKIQVIRVLKVAMEEAKVETPMTASRGNIGSGGDNCSQSLSPRARIVSVASNIASQPLHNSDPQVWGVLTAISNNARKRHQGINILLTADEHRIGRLVEDVRFQIDSNSVSANHCRIYRMKVTNENMENTTSIFLKDTSTNGTYLNWEKLKKNGAAVKVCHGDIISFAAPPQHDLAFAFVYREVLVSSPMPDNAVAKRKAEDFVSENKRLKGLGIGAPEGPISLDDFRSLQRSNMELRKQLENQVVTIDTLRSDNRAAVERHESELKSVKESVEKCYLDQLKELQQMVDLKQKELGDLNRASAEQKHAIEDLDERLSASIQSCAEANSIISSQKVNIAELKEQLDEERTQRKEEREKAAGDLKAAVHRAQSEAQEELKRLSDASLRRERELQETINKLQESEREMSLLVETLRFKLEDTRQKLVASDNKVRQLETQVHEEKLATENEMKKVELEQQETRRLRKELESEKQAAREEAWAKVSVLELEINAAMRDLDFERRRLKGARERLMLRETQLRAFYSTTEEIQILFAKQQEQLKSMQRTLEDDENYENTSVEMDGVIVGTSGREKEVDGFHGQNCAKAGSTTSAQRLNVVHVETSSNEASVTEKHDCDIRSEECQNTQEGEFTSADHDHSVRGGFGSDIDGVDTATMVEGDAAVGTERVLETESPVNQGEQNIDLNKCLDGDTMQIDDDDNNVQETEDHAQKTSREGLHHSQSNNPSDTQKTIEDTEAGGLIRTADLLTSEVAGSWACSTAPSTHGENESPRSRDNNEGSGALHDSNILVAESQNTTSDAAVARENERQALSEMIGIVAPDLREQFGGSAYDCDQEREDHGGSSDSDTESCSNTSIENIAKAKGGTISDEETQLSDHDDEDQKQDDAMDDDDDDEDTEED*

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