Glyma18g45380 - SoyBase

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Report for Sequence Feature Glyma18g45380

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55157063
stop:	55160481
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45440	AT	Annotation by Michelle Graham. TAIR10: dihydrodipicolinate synthase \| chr2:18731294-18732867 FORWARD LENGTH=365	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009089	GO-bp	Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008840	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydrodipicolinate synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
PTHR12128	Panther	DIHYDRODIPICOLINATE SYNTHASE	JGI		ISS
PF00701	PFAM	Dihydrodipicolinate synthetase family	JGI		ISS
UniRef100_C6TG34	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TG34_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q42800	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydrodipicolinate synthase, chloroplastic n=1 Tax=Glycine max RepID=DAPA_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45380

Paralog	Evidence	Comments
Glyma09g40460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g221700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g45380

Limit To All Plant Sequences

>Glyma18g45380.1   sequence type=CDS   gene model=Glyma18g45380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACACTCAAGAGCGTCTGCTTCAGAGGATCCACCTTTCCCGTTTGCCCCTCCAATTTCACGAACACTAGAAACACCAGGAGCTCATGTTGGAGGCCTACACAAGCAGCTGTGAAGTCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGTTTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGGGCTGAAGGTGTTATTGTTGGTGGGACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCTCATACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACTGAGCAGGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGACCCACAATAATCTACAATGTGCCTGCACGGACCGGTCAAGACATTCCTCCGCATGTAATTCAAACCTTAGCTGAAAGTGTTAACCTGGCTGGTGTCAAGGAGTGTGTGGGAAATGACCGAATCAAACAGTATACAGATGATGGAATTGTTGTGTGGAGTGGGAATGATGATCAATGTCATGATGCTAGATGGGGTTATGGGGCTACCGGAGTGGTATCTGTTGCGAGCAACCTGGTTCCCGGTTTAATGCGAGAACTCATGTTTGGCGGTGTAAACCCTACTCTAAATTCTAAACTCTTGCCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGTTTGAACACTGCTCTTGCTCAACTTGGGGTCATCAGACCCGTTTTTAGGCTACCTTTTGTACCTCTCCCTGTGGACAAAAGGATAGAGTTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGTTGTTGAGGTTCTTGATGATGATGACTTTTTCTTGGTTAGTCGTTATTAA

Predicted protein sequences of Glyma18g45380

Limit To All Plant Sequences

>Glyma18g45380.1   sequence type=predicted peptide   gene model=Glyma18g45380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLKSVCFRGSTFPVCPSNFTNTRNTRSSCWRPTQAAVKSNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPARTGQDIPPHVIQTLAESVNLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVVSVASNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVIRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKVVEVLDDDDFFLVSRY*

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