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Report for Sequence Feature Glyma18g45350

Feature Type:gene_model
Chromosome:Gm18
Start:55123761
stop:55125196
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g45350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24620AT Annotation by Michelle Graham. TAIR10: EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186 SoyBaseE_val: 3.00E-28ISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0048610GO-bp Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0048868GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF39Panther EF-HAND CALCIUM BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_G7L0A0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein CML24 n=1 Tax=Medicago truncatula RepID=G7L0A0_MEDTR SoyBaseE_val: 1.00E-76ISS
UniRef100_I1N3F4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3F4_SOYBN SoyBaseE_val: 1.00E-159ISS

Expression Patterns of Glyma18g45350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g45350 not represented in the dataset
Glyma18g45350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g45350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g221300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g45350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g45350
>Glyma18g45350.1   sequence type=CDS   gene model=Glyma18g45350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAACCCTTCACTACTTGCTTCACCTTTCTTCATAGGAAGACCAAATTCTTCCTCAATAAACCAAGAATCAAGGACATGATGAGTGCATGCCGCAAGAGGAGACAATCCAACAGAAAATTCACTTCAAGTTCTGACTTGTCAACCTCTTCTTTCCTTCACATGGAGCTCTCTACTCAGTTTCATCAAGTTTTCAAGCTTATCGACACTAATGGGGATGGGAAGATATCAGCTACTGAGCTCAGTGAAGTGCTCTCATGCCTTGGATACAACAAGTGCACTGCTGACAAGGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGATTGTCATGAATGGCATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAATTTGGAAGTGGCATGGAGCATGGTGGTGGTTACCTCATGGATGCTTTTCTTATCTTTGACACTGACAAGAATGGCTTAATTTCAGCCAAGGAACTGCAGAGAGTTCTGATCAATCTAGGGTGTGATAATTGTAGTCTTAGAGAGTGCAAGCGCATGATCAAAGGGGTTGATAAAAATGGAGATGGGTTCGTGGATTTTGAAGAGTTTCTATCCATGATGCAAAGTGGACTTGCCAATTAG
Predicted protein sequences of Glyma18g45350
>Glyma18g45350.1   sequence type=predicted peptide   gene model=Glyma18g45350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQPFTTCFTFLHRKTKFFLNKPRIKDMMSACRKRRQSNRKFTSSSDLSTSSFLHMELSTQFHQVFKLIDTNGDGKISATELSEVLSCLGYNKCTADKEAEGMVRVLDFNGDGFVDLDEFMIVMNGMEEEEEEEEEEEEEEEEKFGSGMEHGGGYLMDAFLIFDTDKNGLISAKELQRVLINLGCDNCSLRECKRMIKGVDKNGDGFVDFEEFLSMMQSGLAN*






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