SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45420 | AT | Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 18 | chr2:18718601-18720445 FORWARD LENGTH=262 | SoyBase | E_val: 7.00E-72 | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root formation | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PF03195 | PFAM | Protein of unknown function DUF260 | JGI | ISS | |
| UniRef100_B9RDE1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RDE1_RICCO | SoyBase | E_val: 5.00E-80 | ISS |
| UniRef100_I1N3F1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3F1_SOYBN | SoyBase | E_val: 6.00E-167 | ISS |
|
Glyma18g45320 not represented in the dataset |
Glyma18g45320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g40500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g221000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g45320.1 sequence type=CDS gene model=Glyma18g45320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTAGTGGTAACGGGGGTGGTGGTAGTAGTAGTGGTACTGGTAGCCCTTGTGGAGCTTGCAAGTTCTTAAGGAGAAAGTGTGTTTCGGGTTGTATCTTTGCTCCGTACTTTGATTCGGAGCAAGGTACAAGCCATTTTGCTGCGGTGCACAAGGTTTTTGGGGCCAGCAATGTCTCCAAGCTCCTTCTTAGCATTCCAGTGCATAGGAGGCTTGATACGGTCATCACCATTTGTTATGAAGCACAATCAAGGATCAGAGATCCAGTTTATGGCTGTGTTGCCCACATCTTTGCCCTTCAGCAACAGCTGGTAAGCTTACAAGCAGAACTCTCTTACCTACATGGCCACCTTGCTCAAATGGAGTTACCTCAACCATCACCACCTCCTCCACCACCGCAAACAACGGCAGCACCACCCTCCGGTTTCTCAATTGCCGACCTACCGCCGGCCACAGTTGCGGCAGTGCCGGCCACCACCTATGATTTGTCTTCACTTTTTGATCCACTGGGCCAAACTTCATGGGCCATGCAACAGAGGGCCATAGACTTACGTCAATACCTAGCTGCTGCTGCTGCTCCATCAACCACCTCTGGTGCTGACATTCAAGCCGTGGCACGTGACATTCCTCATAGACATGGGTCTCCTCCATCACCTCCTGCGTCAAGCTCCAATGCTTCACCATCTCTATCGCATTCTAAATGA
>Glyma18g45320.1 sequence type=predicted peptide gene model=Glyma18g45320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSGNGGGGSSSGTGSPCGACKFLRRKCVSGCIFAPYFDSEQGTSHFAAVHKVFGASNVSKLLLSIPVHRRLDTVITICYEAQSRIRDPVYGCVAHIFALQQQLVSLQAELSYLHGHLAQMELPQPSPPPPPPQTTAAPPSGFSIADLPPATVAAVPATTYDLSSLFDPLGQTSWAMQQRAIDLRQYLAAAAAPSTTSGADIQAVARDIPHRHGSPPSPPASSSNASPSLSHSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
