SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g45260

Feature Type:gene_model
Chromosome:Gm18
Start:55014789
stop:55017707
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g45260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45400AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:18703960-18706235 REVERSE LENGTH=364 SoyBaseE_val: 4.00E-111ISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010422GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0016131GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid metabolic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016614GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
KOG1502 KOG Flavonol reductase/cinnamoyl-CoA reductase JGI ISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF9Panther NAD(P)H STEROID DEHYDROGENASE-RELATED JGI ISS
PF01370PFAM NAD dependent epimerase/dehydratase family JGI ISS
UniRef100_I1N3E6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3E6_SOYBN SoyBaseE_val: 0ISS
UniRef100_O48602UniRef Annotation by Michelle Graham. Most informative UniRef hit: 2'-hydroxydihydrodaidzein reductase n=1 Tax=Glycine max RepID=O48602_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g45260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45260
ParalogEvidenceComments
Glyma09g40580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g220600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g45260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g45260
>Glyma18g45260.2   sequence type=CDS   gene model=Glyma18g45260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGCAAAAGCCACCAACCAACATTGTTTTGTTGTTATTTATATACACACAAAGAAAGCAAGCAGAGCAAACGTGTTAGAAGTTGAGGATAGCACAAAGAAAAGTAAACACTGCCACAGCAAGAGTGTTCAAATGGGAGAGGGAAAAGGAAGAATTTGTGTCACTGGAGGCACAGGATTCCTTGGTTCATGGATAATCAAGAGCCTCCTTGAACATGGATATGCTGTTAATACCACTATAAGATCTGACCCAGGACGCAAGAGAGATGTTAGCTTCCTCACAAACCTACCTGGTGCATCAGAAAAGCTTAAAATTTTCAACGCTGATCTCAGCGACCCAGAGAGTTTTGGTCCAGCAGTTGAGGGTTGTGTTGGAATTTTTCACACTGCCACCCCAATTGATTTTGCGGTGAACGAGCCAGAGGAAGTGGTGACCAAAAGAGCCATTGATGGAGCACTAGGCATATTGAAAGCAGGCCTAAAAGCAAAGACTGTGAAGAGGGTTGTTTACACTTCTAGCGCCTCCACTGTTTCCTTCAGCAGCCTAGAAGAGAAAGATGTGGTGGATGAGAGTGTTTGGAGTGATGTGGATTTGCTCAGGAGTGTGAAGCCTTTTAGTTGGTCCTATGCAGTTTCAAAGGTGTTGTCAGAGAAGGCAGTGCTTGAATTTGGAGAACAGAATGGATTGGAAGTTACCACTCTTGTGCTTCCTTTTGTTGTTGGACGCTTTGTTTGTCCCAAGCTTCCTGATTCTGTTGAAAGAGCACTGCTTTTGGTGTTAGGCAAAAAGGAAGAAATTGGTGTCATTCGTTACCATATGGTACATGTGGATGATGTGGCTAGAGCACATATCTTCCTGCTTGAGCATCCTAACCCAAAAGGGAGATATAATTGCTCACCATTCATTGTGCCTATTGAAGAGATTGCTGAAATTATTTCAGCCAAATACCCAGAATATCAAATACCAGCACTAGAAGAGGTGAAGGAAATTAAAGGTGCCAAGTTACCACATTTAACCTCCCAGAAACTTGTGGATGCTGGTTTTGAGTTCAAGTATAGCGTTGAGGACATATTTACGGATGCAATTGAATGCTGCAAGGAAAAGGGTTACCTTTAA
Predicted protein sequences of Glyma18g45260
>Glyma18g45260.2   sequence type=predicted peptide   gene model=Glyma18g45260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIAKATNQHCFVVIYIHTKKASRANVLEVEDSTKKSKHCHSKSVQMGEGKGRICVTGGTGFLGSWIIKSLLEHGYAVNTTIRSDPGRKRDVSFLTNLPGASEKLKIFNADLSDPESFGPAVEGCVGIFHTATPIDFAVNEPEEVVTKRAIDGALGILKAGLKAKTVKRVVYTSSASTVSFSSLEEKDVVDESVWSDVDLLRSVKPFSWSYAVSKVLSEKAVLEFGEQNGLEVTTLVLPFVVGRFVCPKLPDSVERALLLVLGKKEEIGVIRYHMVHVDDVARAHIFLLEHPNPKGRYNCSPFIVPIEEIAEIISAKYPEYQIPALEEVKEIKGAKLPHLTSQKLVDAGFEFKYSVEDIFTDAIECCKEKGYL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo