Glyma18g45240 - SoyBase

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Report for Sequence Feature Glyma18g45240

Feature Type:	gene_model
Chromosome:	Gm18
Start:	55000688
stop:	55005540
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G60800	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr3:22467486-22469273 REVERSE LENGTH=307	SoyBase	E_val: 1.00E-173	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1315	KOG	Predicted DHHC-type Zn-finger protein	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_B9RDC5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RDC5_RICCO	SoyBase	E_val: 1.00E-177	ISS
UniRef100_UPI000233DFCC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFCC related cluster n=1 Tax=unknown RepID=UPI000233DFCC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45240

Paralog	Evidence	Comments
Glyma09g40600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g220400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g45240

Limit To All Plant Sequences

>Glyma18g45240.3   sequence type=transcript   gene model=Glyma18g45240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATCATCGCCATTCGCCACTGATATACTACTCATCGGTAATTTCAACAACATTTCAGGTTGCTACGTCTATGCCCAAAAAGTTCCCAATTTTCCATCCAATTCTGCATGAACCATAGATTCACGCAAGAAAAAAAAAACTTTTATTTTTTCTTTGCCTCCGGAATTGGAGCACCGCCATATCCGGTCGCGTGTTTTCTCGTTCGAGGACATCGATGATTCTGCTTGTTCCGCCACTGGCAGCTGTTGTCGTGTTCCGCTTCTGGGATCACCGCCAAGTGCGTAAAGGAACAATCTTTTGGTCCTAAATTGAGGTGGGGTTCCTCTGTTTTTTTCTCTCTCCAATAATATGTATAGATCTGGAGCTGGAATGGCTTGGAACGTGTTTAGGTTCTGCACTGCCCTGCGAGGATTAGGCTCGATCATGATACTAATGGTTCTTGGGGTTGTGGGTGTTACCTATTACGCTGTTGTGTTGACTAATTTTGGACCTGCCTTGTTTGTTGGAGGCCTTGATACTCTTATCTCCTTCGTGGTGTTGATCTTGTTTCATTGTTTGTTGGTTATGTTATTGTGGTGTTACTTTGCTGTTGTGTTTACGGATCCGGGGACTGTACCTCCTAACTGGAAGCCTGCTGTTGATGAGGAGAGAGGAGAGGTTGATCCATTGAACGGGGTAGAATTAAGTAATCTGCAGTCTGATACTTCAAATCAACGGTTCAGATACTGTCGGAAGTGCAGTCAGCCCAAGCCGCCACGATGTCATCATTGTTCTGTTTGTGGACGTTGTGTACTGAAGATGGACCACCATTGTGTCTGGGTAGTTAACTGTGTTGGGGCATCAAATTACAAGTATTTCCTCCTTTTCTTGTTCTACACTCTCCTTGAGACCACTATTGTGACTATATCATTACTGCCACATTTCAAAACATTCTTTACTGATGAAGAAATTCCTGGAACACCCGGCACTCTTGCCACAACTTTTCTTACTTTCGTTTTGAATCTGGCCTTTTCCTTGAGTGTCTTGGGATTTCTTGTCTTGCACATGTCATTGGTAGCTTCTAATACAACCACTATTGAGGCATATGAAAAGAAAACTGCTTCAAAATGGCATTATGACCTTGGTCGTAGAAAAAATTTTGAACAGGTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAGATATACGAAGGATGCCCGTACTTCAGGGCCTTGAGTATCCAACGACACCAGACTTCAATGCCCAAGAGTTTTGAGAGCTAGCATAGCCATATCAGGAGAAACTGCTTTTATCTTTTGCAACAGAAAACATGGAGCATCCAAAGCCTCTCGTTTTGGTCTCTAAGAGAATCTGTAGCATTGAAGCATCTGAGATCCGGGTGGCAATTCGTTTGCATAGGCACTTGGTATGATTAATGTTTTTTTTTCTTTCTTGATGAGACGTGTTCTTGTGCCAAGTTTGAATGGTGAGCAATTTGGTTTAAGGATTTGACTAGTTAATTAGTGTGTTCAAATTCCTGATATGTTATCTCACTCAGGATTAGGAACTATACATGGATTTTCTTCTGTTCAATTTTTTACCCTTCATTGGAACTATACATCAGTATATGTACTGATGTTGCTTGGAATGATTGTTGATTGAAATTTTACAATCAACTGTTCCTTGCATAGATGATGTTCAAATGTAATACGTTCCTGTAAATATATGCAATTCACATGTCATTTACCACAC

>Glyma18g45240.4   sequence type=transcript   gene model=Glyma18g45240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATACTACTCATCGGTAATTTCAACAACATTTCAGGTTGCTACGTCTATGCCCAAAAAGTTCCCAATTTTCCATCCAATTCTGCATGAACCATAGATTCACGCAAGAAAAAAAAAACTTTTATTTTTTCTTTGCCTCCGGAATTGGAGCACCGCCATATCCGGTCGCGTGTTTTCTCGTTCGAGGACATCGATGATTCTGCTTGTTCCGCCACTGGCAGCTGTTGTCGTGTTCCGCTTCTGGGATCACCGCCAAGTGCGTAAAGGAACAATCTTTTGGTCCTAAATTGAGGTGGGGTTCCTCTGTTTTTTTCTCTCTCCAATAATATGTATAGATCTGGAGCTGGAATGGCTTGGAACGTGTTTAGGTTCTGCACTGCCCTGCGAGGATTAGGCTCGATCATGATACTAATGGTTCTTGGGGTTGTGGGTGTTACCTATTACGCTGTTGTGTTGACTAATTTTGGACCTGCCTTGTTTGTTGGAGGCCTTGATACTCTTATCTCCTTCGTGGTGTTGATCTTGTTTCATTGTTTGTTGGTTATGTTATTGTGGTGTTACTTTGCTGTTGTGTTTACGGATCCGGGGACTGTACCTCCTAACTGGAAGCCTGCTGTTGATGAGGAGAGAGGAGAGGTTGATCCATTGAACGGGGTAGAATTAAGTAATCTGCAGTCTGATACTTCAAATCAACGGTTCAGATACTGTCGGAAGTGCAGTCAGCCCAAGCCGCCACGATGTCATCATTGTTCTGTTTGTGGACGTTGTGTACTGAAGATGGACCACCATTGTGTCTGGGTAGTTAACTGTGTTGGGGCATCAAATTACAAGTATTTCCTCCTTTTCTTGTTCTACACTCTCCTTGAGACCACTATTGTGACTATATCATTACTGCCACATTTCAAAACATTCTTTACTGATGAAGAAATTCCTGGAACACCCGGCACTCTTGCCACAACTTTTCTTACTTTCGGTTAGGTTCTGAAACATGGTTTCTAATTTGAGCTGTTGGTTTCATATTTGACTTTTTATAACACTGTTGGATTAGCTGCAGTTTTGAATCTGGCCTTTTCCTTGAGTGTCTTGGGATTTCTTGTCTTGCACATGTCATTGGTAGCTTCTAATACAACCACTATTGAGGCATATGAAAAGAAAACTGCTTCAAAATGGCATTATGACCTTGGTCGTAGAAAAAATTTTGAACAGGTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAGATATACGAAGGATGCCCGTACTTCAGGGCCTTGAGTATCCAACGACACCAGACTTCAATGCCCAAGAGTTTTGAGAGCTAGCATAGCCATATCAGGAGAAACTGCTTTTATCTTTTGCAACAGAAAACATGGAGCATCCAAAGCCTCTCGTTTTGGTCTCTAAGAGAATCTGTAGCATTGAAGCATCTGAGATCCGGGTGGCAATTCGTTTGCATAGGCACTTGGTATGATTAATGTTTTTTTTTCTTTCTTGATGAGACGTGTTCTTGTGCCAAGTTTGAATGGTGAGCAATTTGGTTTAAGGATTTGACTAGTTAATTAGTGTGTTCAAATTCCTGATATGTTATCTCACTCAGGATTAGGAACTATACATGGATTTTCTTCTGTTCAATTTTTTACCCTTCATTGGAACTATACATCAGTATATGTACTGATGTTGCTTGGAATGATTGTTGATTGAAATTTTACAATCAACTGTTCCTTGCATAGATGATGTTCAAATGTAATACGTTCCTGTAAATATATGCAATTCACATGTCATTTACCACAC

Coding sequences of Glyma18g45240

Limit To All Plant Sequences

>Glyma18g45240.2   sequence type=CDS   gene model=Glyma18g45240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAGATCTGGAGCTGGAATGGCTTGGAACGTGTTTAGGTTCTGCACTGCCCTGCGAGGATTAGGCTCGATCATGATACTAATGGTTCTTGGGGTTGTGGGTGTTACCTATTACGCTGTTGTGTTGACTAATTTTGGACCTGCCTTGTTTGTTGGAGGCCTTGATACTCTTATCTCCTTCGTGGTGTTGATCTTGTTTCATTGTTTGTTGGTTATGTTATTGTGGTGTTACTTTGCTGTTGTGTTTACGGATCCGGGGACTGTACCTCCTAACTGGAAGCCTGCTGTTGATGAGGAGAGAGGAGAGGTTGATCCATTGAACGGGGTAGAATTAAGTAATCTGCAGTCTGATACTTCAAATCAACGGTTCAGATACTGTCGGAAGTGCAGTCAGCCCAAGCCGCCACGATGTCATCATTGTTCTGTTTGTGGACGTTGTGTACTGAAGATGGACCACCATTGTGTCTGGGTAGTTAACTGTGTTGGGGCATCAAATTACAAGTATTTCCTCCTTTTCTTGTTCTACACTCTCCTTGAGACCACTATTGTGACTATATCATTACTGCCACATTTCAAAACATTCTTTACTGATGAAGAAATTCCTGGAACACCCGGCACTCTTGCCACAACTTTTCTTACTTTCGCTGCAGTTTTGAATCTGGCCTTTTCCTTGAGTGTCTTGGGATTTCTTGTCTTGCACATGTCATTGGTAGCTTCTAATACAACCACTATTGAGGCATATGAAAAGAAAACTGCTTCAAAATGGCATTATGACCTTGGTCGTAGAAAAAATTTTGAACAGGTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAGATATACGAAGGATGCCCGTACTTCAGGGCCTTGAGTATCCAACGACACCAGACTTCAATGCCCAAGAGTTTTGA

>Glyma18g45240.3   sequence type=CDS   gene model=Glyma18g45240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAGATCTGGAGCTGGAATGGCTTGGAACGTGTTTAGGTTCTGCACTGCCCTGCGAGGATTAGGCTCGATCATGATACTAATGGTTCTTGGGGTTGTGGGTGTTACCTATTACGCTGTTGTGTTGACTAATTTTGGACCTGCCTTGTTTGTTGGAGGCCTTGATACTCTTATCTCCTTCGTGGTGTTGATCTTGTTTCATTGTTTGTTGGTTATGTTATTGTGGTGTTACTTTGCTGTTGTGTTTACGGATCCGGGGACTGTACCTCCTAACTGGAAGCCTGCTGTTGATGAGGAGAGAGGAGAGGTTGATCCATTGAACGGGGTAGAATTAAGTAATCTGCAGTCTGATACTTCAAATCAACGGTTCAGATACTGTCGGAAGTGCAGTCAGCCCAAGCCGCCACGATGTCATCATTGTTCTGTTTGTGGACGTTGTGTACTGAAGATGGACCACCATTGTGTCTGGGTAGTTAACTGTGTTGGGGCATCAAATTACAAGTATTTCCTCCTTTTCTTGTTCTACACTCTCCTTGAGACCACTATTGTGACTATATCATTACTGCCACATTTCAAAACATTCTTTACTGATGAAGAAATTCCTGGAACACCCGGCACTCTTGCCACAACTTTTCTTACTTTCGTTTTGAATCTGGCCTTTTCCTTGAGTGTCTTGGGATTTCTTGTCTTGCACATGTCATTGGTAGCTTCTAATACAACCACTATTGAGGCATATGAAAAGAAAACTGCTTCAAAATGGCATTATGACCTTGGTCGTAGAAAAAATTTTGAACAGGTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAGATATACGAAGGATGCCCGTACTTCAGGGCCTTGAGTATCCAACGACACCAGACTTCAATGCCCAAGAGTTTTGA

>Glyma18g45240.4   sequence type=CDS   gene model=Glyma18g45240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAGATCTGGAGCTGGAATGGCTTGGAACGTGTTTAGGTTCTGCACTGCCCTGCGAGGATTAGGCTCGATCATGATACTAATGGTTCTTGGGGTTGTGGGTGTTACCTATTACGCTGTTGTGTTGACTAATTTTGGACCTGCCTTGTTTGTTGGAGGCCTTGATACTCTTATCTCCTTCGTGGTGTTGATCTTGTTTCATTGTTTGTTGGTTATGTTATTGTGGTGTTACTTTGCTGTTGTGTTTACGGATCCGGGGACTGTACCTCCTAACTGGAAGCCTGCTGTTGATGAGGAGAGAGGAGAGGTTGATCCATTGAACGGGGTAGAATTAAGTAATCTGCAGTCTGATACTTCAAATCAACGGTTCAGATACTGTCGGAAGTGCAGTCAGCCCAAGCCGCCACGATGTCATCATTGTTCTGTTTGTGGACGTTGTGTACTGAAGATGGACCACCATTGTGTCTGGGTAGTTAACTGTGTTGGGGCATCAAATTACAAGTATTTCCTCCTTTTCTTGTTCTACACTCTCCTTGAGACCACTATTGTGACTATATCATTACTGCCACATTTCAAAACATTCTTTACTGATGAAGAAATTCCTGGAACACCCGGCACTCTTGCCACAACTTTTCTTACTTTCGGTTAG

Predicted protein sequences of Glyma18g45240

Limit To All Plant Sequences

>Glyma18g45240.2   sequence type=predicted peptide   gene model=Glyma18g45240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRSGAGMAWNVFRFCTALRGLGSIMILMVLGVVGVTYYAVVLTNFGPALFVGGLDTLISFVVLILFHCLLVMLLWCYFAVVFTDPGTVPPNWKPAVDEERGEVDPLNGVELSNLQSDTSNQRFRYCRKCSQPKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGASNYKYFLLFLFYTLLETTIVTISLLPHFKTFFTDEEIPGTPGTLATTFLTFAAVLNLAFSLSVLGFLVLHMSLVASNTTTIEAYEKKTASKWHYDLGRRKNFEQVFGMDKGYWFIPAYSEEDIRRMPVLQGLEYPTTPDFNAQEF*

>Glyma18g45240.3   sequence type=predicted peptide   gene model=Glyma18g45240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRSGAGMAWNVFRFCTALRGLGSIMILMVLGVVGVTYYAVVLTNFGPALFVGGLDTLISFVVLILFHCLLVMLLWCYFAVVFTDPGTVPPNWKPAVDEERGEVDPLNGVELSNLQSDTSNQRFRYCRKCSQPKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGASNYKYFLLFLFYTLLETTIVTISLLPHFKTFFTDEEIPGTPGTLATTFLTFVLNLAFSLSVLGFLVLHMSLVASNTTTIEAYEKKTASKWHYDLGRRKNFEQVFGMDKGYWFIPAYSEEDIRRMPVLQGLEYPTTPDFNAQEF*

>Glyma18g45240.4   sequence type=predicted peptide   gene model=Glyma18g45240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRSGAGMAWNVFRFCTALRGLGSIMILMVLGVVGVTYYAVVLTNFGPALFVGGLDTLISFVVLILFHCLLVMLLWCYFAVVFTDPGTVPPNWKPAVDEERGEVDPLNGVELSNLQSDTSNQRFRYCRKCSQPKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGASNYKYFLLFLFYTLLETTIVTISLLPHFKTFFTDEEIPGTPGTLATTFLTFG*

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