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Report for Sequence Feature Glyma18g45121

Feature Type:gene_model
Chromosome:Gm18
Start:54863451
stop:54869450
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g45121
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08590AT Annotation by Michelle Graham. TAIR10: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | chr3:2608683-2611237 REVERSE LENGTH=560 SoyBaseE_val: 0ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004619GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate mutase activity SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
GO:0046537GO-mf Annotation by Michelle Graham. GO Molecular Function: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG4513 KOG Phosphoglycerate mutase JGI ISS
PF01676PFAM Metalloenzyme superfamily JGI ISS
PF06415PFAM BPG-independent PGAM N-terminus (iPGM N) JGI ISS
UniRef100_B7FLD9UniRef Annotation by Michelle Graham. Most informative UniRef hit: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=2 Tax=Medicago truncatula RepID=B7FLD9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000189D5B2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D5B2 related cluster n=1 Tax=unknown RepID=UPI000189D5B2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g45121
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g45121 not represented in the dataset
Glyma18g45121 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45121
ParalogEvidenceComments
Glyma09g40690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45121 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g219100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g45121
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g45121
>Glyma18g45121.1   sequence type=CDS   gene model=Glyma18g45121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGCTCAGGTTTCTCATGGAAATTGGCGGATCATCCAAAGCTTCCAAAGGGTAAGACTGTGGCTGTTGTGGTATTGGATGGTTGGGGAGAGGCCACACCCAATGAGTACAACTGCATCCACAAGGCTGAAACACCCTGCATGGATTCACTTAAAAAGGGTGCTCCTGAACGGTGGAGATTGGTCAGGGCTCATGGTACTGCTGTAGGACTTCCAACAGAAGATGACATGGGCAATAGTGAAGTTGGTCACAATGCCCTTGGGGCTGGTCGCATATTTGCTCAGGGTGCTAAGCTTGTCGACCTTGCTCTAGCCTCTGGAAAAATTTTTGAAGGAGAAGGTTTCAAGTACATAAAGGAATGTTTTGAAAATGGCACATTGCATCTCATTGGGCTACTGAGTGATGGTGGAGTTCACTCCAGACTTGATCAGTTGCAGTTGTTGCTTAAAGGAGTTAGTGAGCGAGGTGTTAAAAGAGTCCGTGTCCATATTCTTACAGATGGCCGTGATGTTTTGGATGGCTCAAGTGTGGGGTTTGTGGAAACCCTTGAAAATGATCTTGCAAACTTGCGCGCAAAAGGTGTCGATGCTAGGATAGCATCAGGTGGAGGTCGTATGAATGTCACAATGGATCGTTATGAGAATGATTGGAGTGTTGTGAAACGAGGGTGGGATGCTCAAGTTCTTGGTGAAGCCCCTTATAAGTTTACAAATGCTCTTGAAGCTGTCAAGAAGCTGAGGGCAGAACCAAAGGCCAATGACCAATATTTGCCTCCTTTTGTTATTGTTGACGAGAGTGGGAAACCTGTTGGTCCGATAGTTGATGGTGATGCTGTTGTTACATTCAACTTCCGAGCTGATCGTATGACAATGATTGCTAAAGCTCTTGAGTATGAAAATTTTGACAAATTTGATAGAGTTCGTTACCCAAAAATCCGCTATGCTGGAATGCTTGAATATGATGGTGAATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGTGAGACTGTTAAATTTGGCCACGTCACATTCTTCTGGAATGGAAACCGCTCTGGGTATTTTAATGCAGAATTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGGATTACATTCAATGAACAACCATTAATGAAAGCATTGCAGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCATGCAAGGCAGCTGATGCTGCTGTGAAGATGATTCTTGATGCAATAGAGCAAGTGGGTGGAATTTATGTTGTCACAGCTGACCACGGGAATGCTGAGGATATGGTCAAGAGGGATAAATCTGGAAAACCACTTCTAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTGTGCCAATTGCTATTGGAGGTCCTGGATTGGCCCCTGGTGTCAGATTCCGCAACAATGTTCCAACTGGTGGACTTGCCAACGTTGCTGCAACTGTGATGAATCTTCATGGATTTGAGGCTCCCAGCGACTACGAGACAACTCTGATAGAAGTAGTTGATAACTAG
Predicted protein sequences of Glyma18g45121
>Glyma18g45121.1   sequence type=predicted peptide   gene model=Glyma18g45121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSGFSWKLADHPKLPKGKTVAVVVLDGWGEATPNEYNCIHKAETPCMDSLKKGAPERWRLVRAHGTAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIFEGEGFKYIKECFENGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGVKRVRVHILTDGRDVLDGSSVGFVETLENDLANLRAKGVDARIASGGGRMNVTMDRYENDWSVVKRGWDAQVLGEAPYKFTNALEAVKKLRAEPKANDQYLPPFVIVDESGKPVGPIVDGDAVVTFNFRADRMTMIAKALEYENFDKFDRVRYPKIRYAGMLEYDGELKLPSHYLVSPPEIDRTSGEYLVYNGIRTFACSETVKFGHVTFFWNGNRSGYFNAELEEYVEIPSDSGITFNEQPLMKALQIAEKARDAILSGKFDQVRVNLPNGDMVGHTGDIEATVVACKAADAAVKMILDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPLLGKDGKIQILTSHTLEPVPIAIGGPGLAPGVRFRNNVPTGGLANVAATVMNLHGFEAPSDYETTLIEVVDN*






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