Glyma18g45110 - SoyBase

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Report for Sequence Feature Glyma18g45110

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54851038
stop:	54855225
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54190	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:20061759-20063880 REVERSE LENGTH=467	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N3D2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3D2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9C5G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g54190/F24B22_150 n=1 Tax=Arabidopsis thaliana RepID=Q9C5G8_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45110

Paralog	Evidence	Comments
Glyma09g40710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g219000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g45110

Limit To All Plant Sequences

>Glyma18g45110.2   sequence type=CDS   gene model=Glyma18g45110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAGGAGGCGTGGAGGTTATAGTGGTCGACGCATAGTTGCAAGCAGAAGAGGGAGTGGCAAAAGCAATGCCAACAACAACAACAACAACAACAACAAAAACAACAACAACATCAATGTCATCAAGAAGCTTCAGAGCCGCGAAATTTGGTCGAAGCCTCATCGAGCTTTTGCTTCTGTCACTGCTTCTCACAGATTCCGCTCTATGTGCTTGACGCACCAATACGACACTCATGATCCCTCCAAGACTCCCTCTTCCCTTTGGCCCTTCTTGATGAAGAGAACTAAGGTTGTCGAAATTGTGGCTGCAAAAAACGTGGTCTTTGCTCTTTACCATTCTGGTTTGTGTGCAGCTTTTAGTAGAGAAACTGATGAGAGGATTTGCTTTTTGAATGTTTGCCCTGATGAAATCATTCGGAGCCTCTTCTACAATAAGAACAACGACTCGCTCATTACAGTATCTGTTTATGCTTCTGAGAACTTCAGCTCTTTGAAATGCAGGTCCACAAAGATTGAATACCTACGAAGGGGGAAGCCGGATGCTGGGTTTCCTCTTTTCCAATCTGAATCTTTGAAATGGCCTGGATTTGTTGAGTTTGATGATGTCAATGGAAAGGTCCTAACTTATTCTGCACAAGATTGTATTTACAAGGTCTTTGATCTTAAGAACTACACCATGCTATACTCGATTTTAGATAGGAATGTTCAAGAAATCAAGATCAGCCCTGGCATCATGTTATTAATTTACAATAGAACCAGCGGTCATATTCCCCTAAAGATTATATCCATTGAAGATGGCACAGTTCTCAAAGTGTTCAACCATCTACTTCATCGGAATAAGAAGGTGGACTTCATAGAGCAATTTAATGAAAAGCTTCTAGTCAAGCAAGAAAATGAGAACCTTCAGATTCTTGATGTTCACAATTCTGAGCTGATGGAGGTAAGCAGGACGGAGTTCATGACTCCATCAGCATTTATCTTTCTATACGATAATCAATTGTTCCTTACTTTCAGAAATCGAACAGTTTCTGTTTGGAACTTCCACGGGGAGCTTGTTACTTCATTTGAGGATCACCAGTTGTGGCACCCAGACTGCAACACGAACAACATATACATAACAAGTGATCAGGATCTCATTATGTCTTACTGCAAGGCAGATTCTGATGATCAATGGATTGAAGGCACTGCTGGATCCATTAATGTCAGCAATATCTTGACCGGGAAATGTGTGGCGAAAATAATTGCAACAAGTAGCAGTGCCAAGGCAGACGAGTGCAGCAGTAGTGGTTGCAGCTGCAAGCAAAGTGATTCATGCCTAATGAGGAATTCAGTTGCGGAGGCTTTGGAGGACATCACTGCCCTCTTTTATGAGGAAGACAGAAATGAGATCTATACGGGGAACAGGCATGGTCTTGTTCATGTATGGTCAAACTAA

Predicted protein sequences of Glyma18g45110

Limit To All Plant Sequences

>Glyma18g45110.2   sequence type=predicted peptide   gene model=Glyma18g45110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRRRGGYSGRRIVASRRGSGKSNANNNNNNNNKNNNNINVIKKLQSREIWSKPHRAFASVTASHRFRSMCLTHQYDTHDPSKTPSSLWPFLMKRTKVVEIVAAKNVVFALYHSGLCAAFSRETDERICFLNVCPDEIIRSLFYNKNNDSLITVSVYASENFSSLKCRSTKIEYLRRGKPDAGFPLFQSESLKWPGFVEFDDVNGKVLTYSAQDCIYKVFDLKNYTMLYSILDRNVQEIKISPGIMLLIYNRTSGHIPLKIISIEDGTVLKVFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVHNSELMEVSRTEFMTPSAFIFLYDNQLFLTFRNRTVSVWNFHGELVTSFEDHQLWHPDCNTNNIYITSDQDLIMSYCKADSDDQWIEGTAGSINVSNILTGKCVAKIIATSSSAKADECSSSGCSCKQSDSCLMRNSVAEALEDITALFYEEDRNEIYTGNRHGLVHVWSN*

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