Glyma18g45080 - SoyBase

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Report for Sequence Feature Glyma18g45080

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54827661
stop:	54828986
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05975	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family \| chr3:1792145-1792714 REVERSE LENGTH=189	SoyBase	E_val: 4.00E-37	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03168	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_I1N3C9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3C9_SOYBN	SoyBase	E_val: 1.00E-149	ISS
UniRef100_Q3EBB9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family n=1 Tax=Arabidopsis thaliana RepID=Q3EBB9_ARATH	SoyBase	E_val: 2.00E-34	ISS

Expression Patterns of Glyma18g45080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g45080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g218700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g45080

Limit To All Plant Sequences

>Glyma18g45080.1   sequence type=CDS   gene model=Glyma18g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGAATCACAAAGTAACCAGGACCACGAGCAAGTGGTGGTGATCTCACAGAAAAAGCTAAAGAGGAGAAGAGTGTGTGTGATGGTCACAGGAGCAGTGCTGTTACTGCTCATTGTGCTAGTCATAGTGGCAATTATCTTGGCCTTTACCTTGTTCAAGACCAAAGAACCAAGAACTCAGCTTGTGTCTGCCACTTTAGAAGGTATAGCACCTCGTCTCACACTTCCTGCCATTGACCTACAAATCAATGTCACACTTGACCTCAAGGTTCGGGTTGAAAACAGAAATCGTGCTAGTTTGAAGCATGAAGGGGGAAAGAGTGTGTTGCTGTATAAAGGAAAAGAGGTTGGAGATGCTTATATAAACCCTGGTCTTATTCCTTCAAGGGGTTCTACTATTCTTCCATGCAGACTCACCCTTCAGGTGGAAAAGCTAGCTTCCAACTTGACCAGTTTAGTTGGTGATTTGATGGGGGGAGAGATCTCTATGGACACAGTTACTAGAATTCCTGGGAAAGTTACCTTCCTTGGATTCATCAAGAAACATATTGTTGCAGAGTCCAATTGCCAATTCACTATTAGTGTTTCTGAGTTGAAGATCACAAACCAAACTTGCAAGAGTAAGGCCAAGTTATGA

Predicted protein sequences of Glyma18g45080

Limit To All Plant Sequences

>Glyma18g45080.1   sequence type=predicted peptide   gene model=Glyma18g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTESQSNQDHEQVVVISQKKLKRRRVCVMVTGAVLLLLIVLVIVAIILAFTLFKTKEPRTQLVSATLEGIAPRLTLPAIDLQINVTLDLKVRVENRNRASLKHEGGKSVLLYKGKEVGDAYINPGLIPSRGSTILPCRLTLQVEKLASNLTSLVGDLMGGEISMDTVTRIPGKVTFLGFIKKHIVAESNCQFTISVSELKITNQTCKSKAKL*

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