Glyma18g45050 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g45050

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54799748
stop:	54804995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01990	AT	Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein \| chr5:377373-379600 REVERSE LENGTH=431	SoyBase	E_val: 4.00E-146	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0009672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity	SoyBase	N/A	ISS
KOG2722	KOG	Predicted membrane protein	JGI		ISS
PF03547	PFAM	Membrane transport protein	JGI		ISS
UniRef100_G7KY93	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier component auxin transport protein n=1 Tax=Medicago truncatula RepID=G7KY93_MEDTR	SoyBase	E_val: 1.00E-160	ISS
UniRef100_I1N3C6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3C6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45050

Paralog	Evidence	Comments
Glyma09g40760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g218300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g45050

Limit To All Plant Sequences

>Glyma18g45050.2   sequence type=transcript   gene model=Glyma18g45050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCATTAATTTGGGATGAAGAAGAACAAGTATGTTAATTAAAGTTACATCAATTTTACATTTACATCATTTAAATTTGAGGGGTGTTTCTGTTTGTTGATTTCGTGTCTCCATACTTAGGTCCAAGGAAGAGAGAGAAAAAAATTGAGAATAACAGAACAGAATCATATTCGTATTCATGTGCTGTAGCTGAAGGCATAACATACATCACTGACCCATAACATAATAAACCTTTTTTTTTCTTTCTCTCTCTCAAGCCAAAGACGGTGCAAGACCAAGATCTTCTTCAGCTCCTTCATAGGTGCATGATTTCAGATTGAATTGGTTTTTGGGCACCAAATAGCAATGGCCACGGTGGAGAGGATCCTGTTGGCCCTGCAAAATGAGGGTGCAGGAGGAGAATCCTTGTTGGGGTCAATCAAAATTGCTGTGATGCCCATAGTTAAAGTGTTCACCATGTGCTCCTTGGGACTCCTTATGGCTTCCAAGTATGTTAACATCTTGCCTGCTTCTGGAAGAAAGCTTTTGAATGGGCTGGTGTTTACTCTCTTGCTACCTTGCTTGATTTTCTCCCAATTGGGACAAGCTGTTACCTTGGAGAAGATGCTTGCTTGGTGGTTTATTCCTATGAATGTTGTTCTGAGTTCCATAGCAGGCTCACTCATTGGTTTTGTTGTTGCCACGATTGTCCGTCCTCCATACCCTTTCTTTAAGTTTACAATTGTACAGATTGGAATCGGGAATATTGGGAATGTTCCACTTGTCCTGATTTCTGCTTTGTGTCGAGACCAATCCAATCCCTTTGGAGACATGGAAAAATGCAGCACAGATGGAACTGCCTATATATCATTTGGCCAGTGGGTTGGTGCTATCATCCTATATACATATGTATTTCAAATGTTGGCACCTCCTCCAGAAGGCTCATTTGAGATTGATAATGAAAGTGTTCCCTTAAAGAGCACTCCAATGAGTGATGCTACACCTGAACAAGCTCCATTGCTCGCTAAGGAGGAGGGGGTCACTTCAACAGCTCAAAATAAGAAGTGGGAGATTAAAGACGTCTTGGCATTCCTGTATGAGAAATTGAAGCTTAAGCAAATTCTTCAACCACCTATCATTGCATCAATCCTTGCCATGACACTAGGGGCAATCCCATTTCTCAAGAAACTGATCTTTACACCTGATGGCCCACTGTTCTTCTTCACAGACAGCTGCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCACTAGGAGGCAACCTTATTGATGGACCTGGAAGTTCAAAACTTGGTTTTCAGACAACTGCTGCTATTATTTTTGCAAGGTTACTTATAGTGCCTCCTGTTGGACTTGGGATTGTCATGTTGGCTGACAAGCTTGGTTTTCTTCCCCCTGATGATAAGATGTTTCGATTTGTCCTCCTCCTTCAGCATTCAATGCCAACATCCGTCCTTGCAGGTGCTGTTGCTAATTTAAGAGGTTGTGGAAGGGATGCAGCTGCTGTACTGTTTTGGGTTCATATTTTTGCTATATTCTCAATGGCAGGATGGATTATTCTATATCTAAACATACTCTTCTGAGACTGTATATAGCAATTTGATCCAATTCATTTTGATGCTAGATTAGTGGAGAAACACCAATATTTTATACAAAGAGCCTTTATATGATGATCACGATCAAAATGTCTGCTTTCTACCGATTTATGTTTGTTAAGAAAAGCTGGAAAACACCCTTTTCAAAGTTTAATTGTTTATTTTAAACCATTAGTCTACTAACTATTCCAAATTGGTTTGGAGAACCCATTCACCAGCAATATACTGGAATATTTTTTCAATGCATTATTAGGATGTACGAGAGGAATTATCAATCATTATATTCACATGCCACGCTTGAATAGGTTACACATCATTCATTG

>Glyma18g45050.3   sequence type=transcript   gene model=Glyma18g45050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCATTAATTTGGGATGAAGAAGAACAAGTATGTTAATTAAAGTTACATCAATTTTACATTTACATCATTTAAATTTGAGGGGTGTTTCTGTTTGTTGATTTCGTGTCTCCATACTTAGGTCCAAGGAAGAGAGAGAAAAAAATTGAGAATAACAGAACAGAATCATATTCGTATTCATGTGCTGTAGCTGAAGGCATAACATACATCACTGACCCATAACATAATAAACCTTTTTTTTTCTTTCTCTCTCTCAAGCCAAAGACGGTGCAAGACCAAGATCTTCTTCAGCTCCTTCATAGTTTCAGATTGAATTGGTTTTTGGGCACCAAATAGCAATGGCCACGGTGGAGAGGATCCTGTTGGCCCTGCAAAATGAGGGTGCAGGAGGAGAATCCTTGTTGGGGTCAATCAAAATTGCTGTGATGCCCATAGTTAAAGTGTTCACCATGTGCTCCTTGGGACTCCTTATGGCTTCCAAGTATGTTAACATCTTGCCTGCTTCTGGAAGAAAGCTTTTGAATGGGCTGGTGTTTACTCTCTTGCTACCTTGCTTGATTTTCTCCCAATTGGGACAAGCTGTTACCTTGGAGAAGATGCTTGCTTGGTGGTTTATTCCTATGAATGTTGTTCTGAGTTCCATAGCAGGCTCACTCATTGGTTTTGTTGTTGCCACGATTGTCCGTCCTCCATACCCTTTCTTTAAGTTTACAATTGTACAGATTGGAATCGGGAATATTGGGAATGTTCCACTTGTCCTGATTTCTGCTTTGTGTCGAGACCAATCCAATCCCTTTGGAGACATGGAAAAATGCAGCACAGATGGAACTGCCTATATATCATTTGGCCAGTGGGTTGGTGCTATCATCCTATATACATATGTATTTCAAATGTTGGCACCTCCTCCAGAAGGCTCATTTGAGATTGATAATGAAAGTGTTCCCTTAAAGAGCACTCCAATGAGTGATGCTACACCTGAACAAGCTCCATTGCTCGCTAAGGAGGAGGGGGTCACTTCAACAGCTCAAAATAAGAAGTGGGAGATTAAAGACGTCTTGGCATTCCTGTATGAGAAATTGAAGCTTAAGCAAATTCTTCAACCACCTATCATTGCATCAATCCTTGCCATGACACTAGGGGCAATCCCATTTCTCAAGAAACTGATCTTTACACCTGATGGCCCACTGTTCTTCTTCACAGACAGCTGCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCACTAGGAGGCAACCTTATTGATGGACCTGGAAGTTCAAAACTTGGTTTTCAGACAACTGCTGCTATTATTTTTGCAAGGTTACTTATAGTGCCTCCTGTTGGACTTGGGATTGTCATGTTGGCTGACAAGCTTGGTTTTCTTCCCCCTGATGATAAGATGTTTCGATTTGTCCTCCTCCTTCAGCATTCAATGCCAACATCCGTCCTTGCAGGTGCTGTTGCTAATTTAAGAGGTTGTGGAAGGGATGCAGCTGCTGTACTGTTTTGGGTTCATATTTTTGCTATATTCTCAATGGCAGGATGGATTATTCTATATCTAAACATACTCTTCTGAGACTGTATATAGCAATTTGATCCAATTCATTTTGATGCTAGATTAGTGGAGAAACACCAATATTTTATACAAAGAGCCTTTATATGATGATCACGATCAAAATGTCTGCTTTCTACCGATTTATGTTTGTTAAGAAAAGCTGGAAAACACCCTTTTCAAAGTTTAATTGTTTATTTTAAACCATTAGTCTACTAACTATTCCAAATTGGTTTGGAGAACCCATTCACCAGCAATATACTGGAATATTTTTTCAATGCATTATTAGGATGTACGAGAGGAATTATCAATCATTATATTCACATGCCACGCTTGAATAGGTTACACATCATTCATTG

Coding sequences of Glyma18g45050

Limit To All Plant Sequences

>Glyma18g45050.1   sequence type=CDS   gene model=Glyma18g45050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGGTGGAGAGGATCCTGTTGGCCCTGCAAAATGAGGGTGCAGGAGGAGAATCCTTGTTGGGGTCAATCAAAATTGCTGTGATGCCCATAGTTAAAGTGTTCACCATGTGCTCCTTGGGACTCCTTATGGCTTCCAAGTATGTTAACATCTTGCCTGCTTCTGGAAGAAAGCTTTTGAATGGGCTGGTGTTTACTCTCTTGCTACCTTGCTTGATTTTCTCCCAATTGGGACAAGCTGTTACCTTGGAGAAGATGCTTGCTTGGTGGTTTATTCCTATGAATGTTGTTCTGAGTTCCATAGCAGGCTCACTCATTGGTTTTGTTGTTGCCACGATTGTCCGTCCTCCATACCCTTTCTTTAAGTTTACAATTGTACAGATTGGAATCGGGAATATTGGGAATGTTCCACTTGTCCTGATTTCTGCTTTGTGTCGAGACCAATCCAATCCCTTTGGAGACATGGAAAAATGCAGCACAGATGGAACTGCCTATATATCATTTGGCCAGTGGGTTGGTGCTATCATCCTATATACATATGTATTTCAAATGTTGGCACCTCCTCCAGAAGGCTCATTTGAGATTGATAATGAAAGTGTTCCCTTAAAGAGCACTCCAATGAGTGATGCTACACCTGAACAAGCTCCATTGCTCGCTAAGGAGGAGGGGGTCACTTCAACAGCTCAAAATAAGAAGTGGGAGATTAAAGACGTCTTGGCATTCCTGTATGAGAAATTGAAGCTTAAGCAAATTCTTCAACCACCTATCATTGCATCAATCCTTGCCATGACACTAGGGGCAATCCCATTTCTCAAGAAACTGATCTTTACACCTGATGGCCCACTGTTCTTCTTCACAGACAGCTGCATGATTCTTGGTTCCTTTGGTGATCAGGGAGGCCATGATTCCTTGCATTCTGTTGGCACTAGGAGGCAACCTTATTGA

>Glyma18g45050.2   sequence type=CDS   gene model=Glyma18g45050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGGTGGAGAGGATCCTGTTGGCCCTGCAAAATGAGGGTGCAGGAGGAGAATCCTTGTTGGGGTCAATCAAAATTGCTGTGATGCCCATAGTTAAAGTGTTCACCATGTGCTCCTTGGGACTCCTTATGGCTTCCAAGTATGTTAACATCTTGCCTGCTTCTGGAAGAAAGCTTTTGAATGGGCTGGTGTTTACTCTCTTGCTACCTTGCTTGATTTTCTCCCAATTGGGACAAGCTGTTACCTTGGAGAAGATGCTTGCTTGGTGGTTTATTCCTATGAATGTTGTTCTGAGTTCCATAGCAGGCTCACTCATTGGTTTTGTTGTTGCCACGATTGTCCGTCCTCCATACCCTTTCTTTAAGTTTACAATTGTACAGATTGGAATCGGGAATATTGGGAATGTTCCACTTGTCCTGATTTCTGCTTTGTGTCGAGACCAATCCAATCCCTTTGGAGACATGGAAAAATGCAGCACAGATGGAACTGCCTATATATCATTTGGCCAGTGGGTTGGTGCTATCATCCTATATACATATGTATTTCAAATGTTGGCACCTCCTCCAGAAGGCTCATTTGAGATTGATAATGAAAGTGTTCCCTTAAAGAGCACTCCAATGAGTGATGCTACACCTGAACAAGCTCCATTGCTCGCTAAGGAGGAGGGGGTCACTTCAACAGCTCAAAATAAGAAGTGGGAGATTAAAGACGTCTTGGCATTCCTGTATGAGAAATTGAAGCTTAAGCAAATTCTTCAACCACCTATCATTGCATCAATCCTTGCCATGACACTAGGGGCAATCCCATTTCTCAAGAAACTGATCTTTACACCTGATGGCCCACTGTTCTTCTTCACAGACAGCTGCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCACTAGGAGGCAACCTTATTGATGGACCTGGAAGTTCAAAACTTGGTTTTCAGACAACTGCTGCTATTATTTTTGCAAGGTTACTTATAGTGCCTCCTGTTGGACTTGGGATTGTCATGTTGGCTGACAAGCTTGGTTTTCTTCCCCCTGATGATAAGATGTTTCGATTTGTCCTCCTCCTTCAGCATTCAATGCCAACATCCGTCCTTGCAGGTGCTGTTGCTAATTTAAGAGGTTGTGGAAGGGATGCAGCTGCTGTACTGTTTTGGGTTCATATTTTTGCTATATTCTCAATGGCAGGATGGATTATTCTATATCTAAACATACTCTTCTGA

>Glyma18g45050.3   sequence type=CDS   gene model=Glyma18g45050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGGTGGAGAGGATCCTGTTGGCCCTGCAAAATGAGGGTGCAGGAGGAGAATCCTTGTTGGGGTCAATCAAAATTGCTGTGATGCCCATAGTTAAAGTGTTCACCATGTGCTCCTTGGGACTCCTTATGGCTTCCAAGTATGTTAACATCTTGCCTGCTTCTGGAAGAAAGCTTTTGAATGGGCTGGTGTTTACTCTCTTGCTACCTTGCTTGATTTTCTCCCAATTGGGACAAGCTGTTACCTTGGAGAAGATGCTTGCTTGGTGGTTTATTCCTATGAATGTTGTTCTGAGTTCCATAGCAGGCTCACTCATTGGTTTTGTTGTTGCCACGATTGTCCGTCCTCCATACCCTTTCTTTAAGTTTACAATTGTACAGATTGGAATCGGGAATATTGGGAATGTTCCACTTGTCCTGATTTCTGCTTTGTGTCGAGACCAATCCAATCCCTTTGGAGACATGGAAAAATGCAGCACAGATGGAACTGCCTATATATCATTTGGCCAGTGGGTTGGTGCTATCATCCTATATACATATGTATTTCAAATGTTGGCACCTCCTCCAGAAGGCTCATTTGAGATTGATAATGAAAGTGTTCCCTTAAAGAGCACTCCAATGAGTGATGCTACACCTGAACAAGCTCCATTGCTCGCTAAGGAGGAGGGGGTCACTTCAACAGCTCAAAATAAGAAGTGGGAGATTAAAGACGTCTTGGCATTCCTGTATGAGAAATTGAAGCTTAAGCAAATTCTTCAACCACCTATCATTGCATCAATCCTTGCCATGACACTAGGGGCAATCCCATTTCTCAAGAAACTGATCTTTACACCTGATGGCCCACTGTTCTTCTTCACAGACAGCTGCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCACTAGGAGGCAACCTTATTGATGGACCTGGAAGTTCAAAACTTGGTTTTCAGACAACTGCTGCTATTATTTTTGCAAGGTTACTTATAGTGCCTCCTGTTGGACTTGGGATTGTCATGTTGGCTGACAAGCTTGGTTTTCTTCCCCCTGATGATAAGATGTTTCGATTTGTCCTCCTCCTTCAGCATTCAATGCCAACATCCGTCCTTGCAGGTGCTGTTGCTAATTTAAGAGGTTGTGGAAGGGATGCAGCTGCTGTACTGTTTTGGGTTCATATTTTTGCTATATTCTCAATGGCAGGATGGATTATTCTATATCTAAACATACTCTTCTGA

Predicted protein sequences of Glyma18g45050

Limit To All Plant Sequences

>Glyma18g45050.1   sequence type=predicted peptide   gene model=Glyma18g45050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVERILLALQNEGAGGESLLGSIKIAVMPIVKVFTMCSLGLLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAVTLEKMLAWWFIPMNVVLSSIAGSLIGFVVATIVRPPYPFFKFTIVQIGIGNIGNVPLVLISALCRDQSNPFGDMEKCSTDGTAYISFGQWVGAIILYTYVFQMLAPPPEGSFEIDNESVPLKSTPMSDATPEQAPLLAKEEGVTSTAQNKKWEIKDVLAFLYEKLKLKQILQPPIIASILAMTLGAIPFLKKLIFTPDGPLFFFTDSCMILGSFGDQGGHDSLHSVGTRRQPY*

>Glyma18g45050.2   sequence type=predicted peptide   gene model=Glyma18g45050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVERILLALQNEGAGGESLLGSIKIAVMPIVKVFTMCSLGLLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAVTLEKMLAWWFIPMNVVLSSIAGSLIGFVVATIVRPPYPFFKFTIVQIGIGNIGNVPLVLISALCRDQSNPFGDMEKCSTDGTAYISFGQWVGAIILYTYVFQMLAPPPEGSFEIDNESVPLKSTPMSDATPEQAPLLAKEEGVTSTAQNKKWEIKDVLAFLYEKLKLKQILQPPIIASILAMTLGAIPFLKKLIFTPDGPLFFFTDSCMILGEAMIPCILLALGGNLIDGPGSSKLGFQTTAAIIFARLLIVPPVGLGIVMLADKLGFLPPDDKMFRFVLLLQHSMPTSVLAGAVANLRGCGRDAAAVLFWVHIFAIFSMAGWIILYLNILF*

>Glyma18g45050.3   sequence type=predicted peptide   gene model=Glyma18g45050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVERILLALQNEGAGGESLLGSIKIAVMPIVKVFTMCSLGLLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAVTLEKMLAWWFIPMNVVLSSIAGSLIGFVVATIVRPPYPFFKFTIVQIGIGNIGNVPLVLISALCRDQSNPFGDMEKCSTDGTAYISFGQWVGAIILYTYVFQMLAPPPEGSFEIDNESVPLKSTPMSDATPEQAPLLAKEEGVTSTAQNKKWEIKDVLAFLYEKLKLKQILQPPIIASILAMTLGAIPFLKKLIFTPDGPLFFFTDSCMILGEAMIPCILLALGGNLIDGPGSSKLGFQTTAAIIFARLLIVPPVGLGIVMLADKLGFLPPDDKMFRFVLLLQHSMPTSVLAGAVANLRGCGRDAAAVLFWVHIFAIFSMAGWIILYLNILF*

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