Glyma18g45020 - SoyBase

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Report for Sequence Feature Glyma18g45020

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54781377
stop:	54786572
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01970	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). \| chr5:373014-374651 REVERSE LENGTH=351	SoyBase	E_val: 1.00E-102	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_Q84YE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein-like protein n=1 Tax=Sorghum bicolor RepID=Q84YE8_SORBI	SoyBase	E_val: 3.00E-60	ISS
UniRef100_UPI000233DFC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFC7 related cluster n=1 Tax=unknown RepID=UPI000233DFC7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45020

Paralog	Evidence	Comments
Glyma09g40780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g218000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g45020

Limit To All Plant Sequences

>Glyma18g45020.1   sequence type=CDS   gene model=Glyma18g45020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTACAGGAGAAGGCAAGGTATATCCAGGTCTTCCACCTTCAAGGAAGAATTTCATGATCCATCATTGGAAGATGTACATGTTAAGGATTCTAATCATGACAATGCTTCTCCTTCAATCTTCTCATCTTCTTCTTCAACACCAGCTTCATCTCTTGCTGCTCAAGCCATCAAAGCCACTGCTTCTCGCCATCAGCCTTCTCTTTCCTTCGCTTTTGCCCCCGCCGAGTCTGACCATCAAAGATCCAAGAGCTTTGAGGCTTACGGAAATGGCAACTCCAAGTCTGGTTTCTGGGGTGTGATTGCCCAGAAAGCCAAATCAATATTGGATGATGATAAGCCAACCCCACAACATGACACCATGCCCCAAACCCAAACACTCAAATCACACTCATTTAATACCTTTTCAGGTCCTTCTGCAGCTCAGAACTCCCCTTCACAATTCAAGCCAGTATATGAATCCCTCGACTCGAGTAGAAAAATGGACAATCCTAAATTTCGGAAGGGCTTGGATAAAATCACCACGTCCCTCAATCAACTAGGTGACACTTTTGAGAAGGCTTTTGAGGAAGGCCGAACAATTATGGAGAGTAAGAAAGCAGACCTGAGAACTCAAATCAGGAGAAAAGGAAATAACTCTGGGGACACAAACCTGACTTCAGATATGAGAAATCCATTGCAAGAAGCCACCCAGACACAGAATCAGTCTAGCCATGAAACAAAACTCAAGGCATCACGCGACGTGGCAATGGCAACAGCTGCCAAAGCAAAATTACTTCTTCGCGAGCTAAAATCCGTTAAAGCAGATTTGGCTTTTGCTAAAGCAAGGTGTACTCAACTTGAAGAAGAGAATAAAGTACTCCGGGACCGAGAGGGCAGTGATAAGGGACAGAACCGTGAAGATGATGATCTGATAAGGCATCAATTGGAGACACTTCTAGCTGAGAAGGCTCGTCTGGCGAGTGAGAATGAGACATATTCAAGAGAAAACCGTTTCTTGAGGGAAATTGTGGAGTACCATCAGCTAACTATGCAGGATGTGGTGTATATAGATGAGGGCATGGGAGAAGTCAGCGAAGTTTACCCTGTAGATGACAGTGGGATCACACGGTTGTTATCTGTTTCTCCACACTCATCTGATGAGGATGTTCTGGTCTCACCAAGTCCGCCTATGCTATCAAAAGAAATATTTACTGTGCCGGAAGAAGATAGTAAGAGTATATCAGAAGATGATGCTCCTTCTGCTGTCTCAGTTTCTCCACATACAAAATGA

Predicted protein sequences of Glyma18g45020

Limit To All Plant Sequences

>Glyma18g45020.1   sequence type=predicted peptide   gene model=Glyma18g45020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYRRRQGISRSSTFKEEFHDPSLEDVHVKDSNHDNASPSIFSSSSSTPASSLAAQAIKATASRHQPSLSFAFAPAESDHQRSKSFEAYGNGNSKSGFWGVIAQKAKSILDDDKPTPQHDTMPQTQTLKSHSFNTFSGPSAAQNSPSQFKPVYESLDSSRKMDNPKFRKGLDKITTSLNQLGDTFEKAFEEGRTIMESKKADLRTQIRRKGNNSGDTNLTSDMRNPLQEATQTQNQSSHETKLKASRDVAMATAAKAKLLLRELKSVKADLAFAKARCTQLEEENKVLRDREGSDKGQNREDDDLIRHQLETLLAEKARLASENETYSRENRFLREIVEYHQLTMQDVVYIDEGMGEVSEVYPVDDSGITRLLSVSPHSSDEDVLVSPSPPMLSKEIFTVPEEDSKSISEDDAPSAVSVSPHTK*

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