Glyma18g45010 - SoyBase

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Report for Sequence Feature Glyma18g45010

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54777547
stop:	54782777
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01960	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:370811-372775 FORWARD LENGTH=426	SoyBase	E_val: 0	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4638	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR15860	Panther	UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7KY88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7KY88_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N3C3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Spermatophyta RepID=I1N3C3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g45010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45010

Paralog	Evidence	Comments
Glyma09g40791	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g217900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g45010

Limit To All Plant Sequences

>Glyma18g45010.2   sequence type=transcript   gene model=Glyma18g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGGATAAAGCATTGAGCAAGTATAGCATCCGAAATGGTTGCTTCTCTCTTTTTCTTGTATGGTTTGTCGTTTGTCTTGTACCCAACCCATCTTTGTTTCTCTCTCTCTCTCTCTCTCAAGCTTTTCCCTGCACACCACAGCAGAAGAGAAAGAAAGAAAAGAAGACCCATCCCACCCAACCACCCTCTTTTTCCCTTCAACCACCGCCTTCACTCCCCTCGTTAACCTAACCTAACCCTAATTCTTCGTCTTCACCGTCCATAACCCCAAACCCTAGCCCCTCTTTCATGATTTTTTAGGGTTATGGAAGGCAACAACAACAACAACAACAACAACGCTGACGTGTTCAGACCTTCTGTGGGGCCCTCCTCCTCGCCGAACTCGAGGAGATACTCGGGGATTTTATCGGCGTCGAACCTCATTCAGGCACCGCTATCGGCGCTGCTGGAATATTCCGGCATCCTTCCGTCACGGTCGTCCAACCAACACAGCCAGCCCAGCTCCGACGCCGCCAACAATGACGGCGAGGTTTCGATTAGGATCATCGGCCCGGCGGAACAGGAGCAGAGGGAGGAACAACAGCTGCAGCAGACCCCTCCTCCCGGATTGGTCGTCGGACTCTCGCATTCCCAGAACGACACCGTTTTGGCATCGGGGTCGCCGCGCGGCGACGCCGAGGGCGCGGCGGGGACCGAGGGCGCCGCCGCTGGAGGGGACGGTGCAGGGAGGGATTCATCTTACCAGAGATATGACATTCAGCATGCCGCCAGGTGGATTGAGCAGGTTTTGCCGTTTTCGTTGCTTCTGTTGGTGGTTTTCATTAGGCAGCATTTGCAAGGGTTTTTTGTGACCATTTGGATTGCTGCTGTGCTTTTCAAGTCCAATGATATTCTAAGGAAACAAACTGCGTTGAAGGGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTCTACTGGTGGTATCAGAATGATGATCTAATGTATCCATTGATCATGCTTCCTCCCAAGGATATACCGCCTTTCTGGCACGCGATTTTCATCATCATGGTCAATGATACTTTGGTTCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGTGAAAGCATTGTCGCGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCCGCAGACCTTAGGTCATTTGGGGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGAAATCATATATAAATACCAACCAGGAAGTTTTTTTCTGCTTTGAAGCTTTACTTTTTCAAAGCAGCAGTCACGATCTATATACATCAACACATGTAAAATGCTCTGGAGGCAATTGTGGGGATACTCTTTGAAGATGAATGCAGCTGTATACTGGTCATGCGTTCATATAATGTACTAGCAAAAAAGGTTGAGTGTATCTAAATGACCCTGTAAACTAGGAAGTCGATTGAAAATATAATATTAAACATGACTCTTCATTTGCAAGGAATGAAGGTCTTTCTCCGAATTGCATCACGATTCTGTCATATAGTGCCAAATCAAACTGTTAATTTTAAATATATTTTTTATTTTTGAATCTCTCTTTATGTGGGCTTTGATGCACACCTCAAGGAGTGTTGCCCACGGGCAGATTATGGTTAAAGATCTCGCACTTCATGTATTAAATCTGTGGATACTAGTTTATTTTTGTAGCAGTTAATAGTTAATTTGACCATGATTATGTGCTGATGACTGTGTATTACAAGATTTGAAAGCAAGCATACGTCTTTAAGAGCCTAGTTATAAGTATAGATGTACTGGAAAGCTGCATCTACCGTAGAATTCTATCCAGAAGAAATCTAAACTGTTGATAATATTCTGTCCTTTAATTGGTGTTGCAATAACCAATCAATTTCAAGATTATGCAAGACAGTAGTTGGAGAGAAGTTTGGGGAGGATCTCTCTCCCGTAGAATTCTCGACTGTCGAGCGCATTTTCTTTCTAATTGCTGTTGCAATAACCAATCAAAGGTCTAAATTCTGCAGGACGGTGGCTGGAGAGGATCTGAGATGGTCCTCAGCCACCATTAGGTTGGAATAAAGTTATGTCATATTTGATTCATTTAATAAACATAAACCAGTTGAAGAATGACTTGACTTTAATTTCCTCAAGCTATACACCAGCAATAATATGAAAAATTGTTTATACTTGTGGGATGGCAATTGACAATTGTTTCCAAAAGTTAAGATGATATTAAATTATATTTATCATAGTAAAGAAACAATTTTAAGGTGAATGCGTTTAGAATTTAAATACATATTTTTATACGATTTTTTAATCAGACAGAACATGTGATTATTTCCCAGATTCTTAATTCAATTCAATGCCTGTATCGATTTAGAATAGTTACCAATGTTTTCTGAAATAATTTGCTGCAACGGATCCTGATTCAAAGAGGGTAGCCGAACTCCTTGAGCAGAACCAAAGGCTTTCTGTTACAGTGTCTCGATCATTGTACTCTTCCAGAATTTCGAGTTGGTTTATTATAAGTTACAACTTCATATTATGACAAATTCACTTCATTAACGCATCGTTTCTTTCCTTTCATAAAACATTTTACATGAGAATTCGCCTAACCCAGCTTTCCACTTTCTGGACTCCAAGAGCAAGATGATAAATTGATATTTGATGTGAAGTATGATAATTCCTTTTCCGTCCTACTTTGAATATTTTTAAAATGTTAAATGAAACAGTCATATTCCTAATTGTTCCAGATCCAAAAAATTATGATCAACCAATACATTTTTTTTTCTTTGGCAAACCAACCTTACCATGAAAGGAAAGTCACACACAAAACAAAACATATGGCTTTCTCTTCATATACCCTCACTCTCTTCCTCACATTGCATCAAGGTAGAAGAAATAAATAAGCGTTCAAAAAGCATGCACATTTTCCTCAAAACAAGAGAACCTCATCTAAGGCTAAACCATT

Coding sequences of Glyma18g45010

Limit To All Plant Sequences

>Glyma18g45010.1   sequence type=CDS   gene model=Glyma18g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCAACAACAACAACAACAACAACAACGCTGACGTGTTCAGACCTTCTGTGGGGCCCTCCTCCTCGCCGAACTCGAGGAGATACTCGGGGATTTTATCGGCGTCGAACCTCATTCAGGCACCGCTATCGGCGCTGCTGGAATATTCCGGCATCCTTCCGTCACGGTCGTCCAACCAACACAGCCAGCCCAGCTCCGACGCCGCCAACAATGACGGCGAGGTTTCGATTAGGATCATCGGCCCGGCGGAACAGGAGCAGAGGGAGGAACAACAGCTGCAGCAGACCCCTCCTCCCGGATTGGTCGTCGGACTCTCGCATTCCCAGAACGACACCGTTTTGGCATCGGGGTCGCCGCGCGGCGACGCCGAGGGCGCGGCGGGGACCGAGGGCGCCGCCGCTGGAGGGGACGGTGCAGGGAGGGATTCATCTTACCAGAGATATGACATTCAGCATGCCGCCAGGTGGATTGAGCAGGTTTTGCCGTTTTCGTTGCTTCTGTTGGTGGTTTTCATTAGGCAGCATTTGCAAGGGTTTTTTGTGACCATTTGGATTGCTGCTGTGCTTTTCAAGTCCAATGATATTCTAAGGAAACAAACTGCGTTGAAGGGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTCTACTGGTGGTATCAGAATGATGATCTAATGTATCCATTGATCATGCTTCCTCCCAAGGATATACCGCCTTTCTGGCACGCGATTTTCATCATCATGGTCAATGATACTTTGGTTCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAAGCATTGTCGCGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCCGCAGACCTTAGGTCATTTGGGGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA

>Glyma18g45010.2   sequence type=CDS   gene model=Glyma18g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCAACAACAACAACAACAACAACAACGCTGACGTGTTCAGACCTTCTGTGGGGCCCTCCTCCTCGCCGAACTCGAGGAGATACTCGGGGATTTTATCGGCGTCGAACCTCATTCAGGCACCGCTATCGGCGCTGCTGGAATATTCCGGCATCCTTCCGTCACGGTCGTCCAACCAACACAGCCAGCCCAGCTCCGACGCCGCCAACAATGACGGCGAGGTTTCGATTAGGATCATCGGCCCGGCGGAACAGGAGCAGAGGGAGGAACAACAGCTGCAGCAGACCCCTCCTCCCGGATTGGTCGTCGGACTCTCGCATTCCCAGAACGACACCGTTTTGGCATCGGGGTCGCCGCGCGGCGACGCCGAGGGCGCGGCGGGGACCGAGGGCGCCGCCGCTGGAGGGGACGGTGCAGGGAGGGATTCATCTTACCAGAGATATGACATTCAGCATGCCGCCAGGTGGATTGAGCAGGTTTTGCCGTTTTCGTTGCTTCTGTTGGTGGTTTTCATTAGGCAGCATTTGCAAGGGTTTTTTGTGACCATTTGGATTGCTGCTGTGCTTTTCAAGTCCAATGATATTCTAAGGAAACAAACTGCGTTGAAGGGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTCTACTGGTGGTATCAGAATGATGATCTAATGTATCCATTGATCATGCTTCCTCCCAAGGATATACCGCCTTTCTGGCACGCGATTTTCATCATCATGGTCAATGATACTTTGGTTCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGTGA

Predicted protein sequences of Glyma18g45010

Limit To All Plant Sequences

>Glyma18g45010.1   sequence type=predicted peptide   gene model=Glyma18g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGNNNNNNNNADVFRPSVGPSSSPNSRRYSGILSASNLIQAPLSALLEYSGILPSRSSNQHSQPSSDAANNDGEVSIRIIGPAEQEQREEQQLQQTPPPGLVVGLSHSQNDTVLASGSPRGDAEGAAGTEGAAAGGDGAGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMLVLVGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF*

>Glyma18g45010.2   sequence type=predicted peptide   gene model=Glyma18g45010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGNNNNNNNNADVFRPSVGPSSSPNSRRYSGILSASNLIQAPLSALLEYSGILPSRSSNQHSQPSSDAANNDGEVSIRIIGPAEQEQREEQQLQQTPPPGLVVGLSHSQNDTVLASGSPRGDAEGAAGTEGAAAGGDGAGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMLVLVGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEK*

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