Glyma18g45000 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g45000

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54764124
stop:	54766593
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g45000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08600	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1191) \| chr3:2612646-2613596 FORWARD LENGTH=316	SoyBase	E_val: 3.00E-86	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0030243	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR23220	Panther	INTEGRIN ALPHA	JGI		ISS
PTHR23220:SF27	Panther	UNKNOWN PROTEIN	JGI		ISS
PF06697	PFAM	Protein of unknown function (DUF1191)	JGI		ISS
UniRef100_I1N3C2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3C2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2QYI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q2QYI6_ORYSJ	SoyBase	E_val: 2.00E-99	ISS

Expression Patterns of Glyma18g45000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g45000

Paralog	Evidence	Comments
Glyma09g40800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g45000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g217800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g45000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g45000

Limit To All Plant Sequences

>Glyma18g45000.1   sequence type=CDS   gene model=Glyma18g45000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTCTTCTTCCAAGTCTAGTAATGGTGTTTGCTCTTGTTTTGTGCTTTGAATCACTTCCTAGTGTTAGGGTTCAGTCTTCTACTACTTCTCCCGGGTCATCTTCAAAAAGGGAAGAAGCAAAGGCTCTTGATGCACTTCTCCAACAATATGCTTACAGGGCTTTGGTGAATCCAAAAACAGGTATCATCTACAATGCAACTCATCTTCCTTCCAATTTGACTGAGATTGAGGTTGCGGCATTGAGATTAAGGAGTGGAAGTTTAAGGAGAAAAGGGTTCCAGGCATACAATGAATTTGAAATTCCCAAGGGACTCATTGGGAGTCCTTATGTGGAGAGGCTTGTTTTGGTGTACCAAAATCTGGGTAATTGGTCCAGCAGGTACTACTACCCTTTGCCTAATTATACTTATTTGGCTCCAGTGTTGGGACTACTGGCTTATGATGGTTCAAATTTGTCAGTAACAAGTTTATCAGAACTAGACATAGACGCATCTGAGGGCCCTATATTGGTCAAGTTCAGGGATGTGAAACAAGCCCCTCATGGTGCTGTTGCAAAATGTGTTTGGTTTGATTTGCAAGGTTCTTCCAATTTCAGCAATGTGACAGGTGGCAACACATGTTCTACTACTCAACAGGGTCATTTCTCTATAGTGGTTAAATCCACTGCTCCTCTAGCACCTTCTCCAACTCCTGCAGGTGCTGCTCCTAAAGGGGAAGGTGAGAAGGGGAATAATAAGAAAGTGTGGATCATTGTAGGGTCTGTTGTGGGGGGACTAGCATTGCTTGTGTTGTTGTCACTTCTAGTTTTGTGGATGAGCAAATACAAACAGAAGAAGAGAATGCAACAGATGGAAAGGGCTGCAGAGGTGGGAGAGCCTCTTCAAATGGCTTCAATTGGGGATACAAAAGCACCTGCTGCAACAGTAACAAGAACACAACCAACCCTTGAACACGAATATGCACCCTGA

Predicted protein sequences of Glyma18g45000

Limit To All Plant Sequences

>Glyma18g45000.1   sequence type=predicted peptide   gene model=Glyma18g45000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLLPSLVMVFALVLCFESLPSVRVQSSTTSPGSSSKREEAKALDALLQQYAYRALVNPKTGIIYNATHLPSNLTEIEVAALRLRSGSLRRKGFQAYNEFEIPKGLIGSPYVERLVLVYQNLGNWSSRYYYPLPNYTYLAPVLGLLAYDGSNLSVTSLSELDIDASEGPILVKFRDVKQAPHGAVAKCVWFDLQGSSNFSNVTGGNTCSTTQQGHFSIVVKSTAPLAPSPTPAGAAPKGEGEKGNNKKVWIIVGSVVGGLALLVLLSLLVLWMSKYKQKKRMQQMERAAEVGEPLQMASIGDTKAPAATVTRTQPTLEHEYAP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain