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Report for Sequence Feature Glyma18g44970

Feature Type:gene_model
Chromosome:Gm18
Start:54726100
stop:54728195
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g44970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08640AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3411) | chr3:2622992-2624005 FORWARD LENGTH=337 SoyBaseE_val: 1.00E-125ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF11891PFAM Domain of unknown function (DUF3411) JGI ISS
UniRef100_D7L765UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alphavirus core protein family n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L765_ARALL SoyBaseE_val: 3.00E-121ISS
UniRef100_I1N3B9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N3B9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g44970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44970
ParalogEvidenceComments
Glyma09g40830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g217200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g44970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g44970
>Glyma18g44970.1   sequence type=CDS   gene model=Glyma18g44970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCATGGCTATGTTGCGTTTATCACCACTCTCTGGTCAAAACCATGCACTTTCTTTCCCATCATCACCATCACCACCACCTAAGCTTCAGAACCGTCCTCTGTATCTCACCAATTTGCCTCATTTGCCCCAAAGGTTGAAACTTTCCTTCGCCGGCGGCGACGGCGGAGATGGGGTGGGACGTGGTGGCGGTGGCGGTGGCGGAGGTGAAAGCTGGGGTGATGAAGGAAAACCCAAAGATTCATCTTTTGGAATTTTGGGTCTTTTTCTGAACGGTTGGAGATCAAGGGTTGCCGCTGATCCACAATTCCCTTTCAAGGTTTTGATGGAGGAGTTGGTGGGTGTGAGTGCTTGTGTATTAGGTGACATGGCTTCAAGGCCTAATTTTGGGTTGAATGAACTTGACTTTGTCTTTTCAACTTTGGTGGTTGGGGCAATCCTCAATTTCACTCTCATGTATCTATTGGCACCTACCATGACATCATCAGCAGCATCAAATCTACCCGCCCTATTTGCTTCATGCCCCAAGAGTCACATGTTTGAGCCTGGTGCCTTTTCTCTTTTGGATAGGTTAGGAACCTTGGTGTACAAAGGGACCATTTTTTCTGTTGTTGGCTTTGGTGCTGGACTAGTTGGAACCACACTTTCAAATGGGCTGATCAAGATGAGGAAGAAGATGGATCCAACCTTTGAGACCCCAAACAAGCCTCCACCAACCTTTTTGAATGCTCTAACTTGGGCTGGTCACATGGGGGTTAGCAGCAATTTGAGGTACCAGACTCTGAATGGAGTTGAGTTCATGTTGGAGAGGGTGCTTAACCCCTTGGCTTTCAAGTCCTCAGTGTTGGTGCTGAGGTGTGTGAACAATGTTATTGGGGGCATGTCTTTTGTGGTGCTGGCAAGGTTGACTGGGGCACAGAGTGTTGGAGGGGAGCAGAAGAAGGAGAATGAGGTTGCTTTGATTGCTGAGAAGGAGAAGTTGGAGTCAGAGAGGGAAGAAGGGTTGCAGAATAATCAGTCGACAGCACCATCAAAGTGA
Predicted protein sequences of Glyma18g44970
>Glyma18g44970.1   sequence type=predicted peptide   gene model=Glyma18g44970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAMAMLRLSPLSGQNHALSFPSSPSPPPKLQNRPLYLTNLPHLPQRLKLSFAGGDGGDGVGRGGGGGGGGESWGDEGKPKDSSFGILGLFLNGWRSRVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGAILNFTLMYLLAPTMTSSAASNLPALFASCPKSHMFEPGAFSLLDRLGTLVYKGTIFSVVGFGAGLVGTTLSNGLIKMRKKMDPTFETPNKPPPTFLNALTWAGHMGVSSNLRYQTLNGVEFMLERVLNPLAFKSSVLVLRCVNNVIGGMSFVVLARLTGAQSVGGEQKKENEVALIAEKEKLESEREEGLQNNQSTAPSK*






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