Glyma18g44960 - SoyBase

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Report for Sequence Feature Glyma18g44960

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54714113
stop:	54718814
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08650	AT	Annotation by Michelle Graham. TAIR10: ZIP metal ion transporter family \| chr3:2624694-2626879 REVERSE LENGTH=595	SoyBase	E_val: 0	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0046873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG2474	KOG	Zinc transporter and related ZIP domain-containing proteins	JGI		ISS
PTHR11065	Panther	GUFA PROTEIN - RELATED	JGI		ISS
PTHR11065:SF5	Panther	INTEGRAL MEMBRANE PROTEIN	JGI		ISS
PF02535	PFAM	ZIP Zinc transporter	JGI		ISS
UniRef100_G7KY80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ZIP transporter n=1 Tax=Medicago truncatula RepID=G7KY80_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N3B8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3B8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44960

Paralog	Evidence	Comments
Glyma09g40840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g217100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44960

Limit To All Plant Sequences

>Glyma18g44960.1   sequence type=CDS   gene model=Glyma18g44960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAAATCTGAGGCTAAGATTATGTGTTCCCTTGTTGTTTTTGTTGTTGAGTTTTCTCTTGAATTCTAATGCGGAATTGGATCATCAAGTTTCACATAAGGTCATAGCTGCTCCTCATAAAGATGTAGGGACAAATGTAATTGATGGCACCGGTGTAGAGAATGCTTTTAATTTTGAGAATGCCAATAGTGTGGTGGGTAGTCGGAAGGGTGGAAGCAGTAAGGTTTCGGTTTCGACGGTTGCGTTGTTTACTCTGGCGATGGCAGCTGCCACTGGCTTAGGTGCCGTGCCATTCTTCTTTGTGGAGCTTGATCCGCAGTGGGCTGGATTATGCAATGGAATGGCTGCAGGTGTCATGTTGGCTGCGAGCTTTGATTTGATCCAAGAAGGGCAGGAGTTTGGTGCTGGAAATTGGGTTGTCACTGGGATTCTTGCTGGTGGAATCTTTATTTGGCTATGTAAGAAGTTTCTTGAGCAGTATGGGGAAGTAAGCATGTTGGATTTAAAAGGTGCTGATGCTACCAAAGTTGTTCTTGTTATTGGAATAATGACTCTCCATTCTTTTGGGGAGGGATCTGGTGTTGGGGTCTCATTTGCTGGGTCAAAGGGTTTCACTCAAGGCCTGTTGGTAACTTTGGCTATTGCGGTACACAACATTCCTGAGGGCTTAGCTGTGAGCATGGTGCTTGCATCAAGGGGCGTCTCTCCACAGAATGCTATGTTATGGAGCATAATTACATCTTTACCCCAGCCAATTGTAGCCGTTCCTTCATTTATTTGTGCTGATGCATTCAGCAAGTTTCTTCCTTTTTGTACGGGATTTGCTGCTGGATGCATGATTTGGATGGTCATTGCGGAAGTGCTTCCTGATGCTTTCAAGGAAGCCTCAGCTTCACAGGTTGCATCAGCTGCAACCCTTTCTGTAGCATTTATGGAAGCTCTCAGCACCTTCTTCCAGAATTTCAGTCATGACTACAACTCTGAGGATGCTTCAGGCTTTTTTGTTTCATTACTTTTTGGTCTTGGCCCTTTACTTGGAGGAATTATTTTGGTTGTATTTGCTCTTGCTTTGCGTCTTCAGCATGCTCTCCTCATGGGCACCGCATGCGGTATTGCCTTTGTTCTCGGTGCCTGGCGACCGGTGCAGCTTATTTTGTCTTCAAAATTGGGACTTTTCCCTGTTTTGTTACTCCTTGCAATGGGGGCTGCTTTCATCCATGTTTCATCATCTGGTGTATTGAAGGTGGCAGCATCCAAGAAAGCCTCAGTCAATGACTTACCTACACTCACCGGCTTCCCACTCAGTGTTCACACCCTTCAATCATTCATATCATGTGGTGCAGTTGCGTTTCACGCATTGGCTGAAGGACTTGCATTGGGAGTGGCTGCACCAAAAGCATATGGGCTTGGTCGTCACATGGTCCTTCCAGTCTCTCTACATGGGCTTCCTCGAGGTGCAGCTGTGGCTAGCTGTATATTTGGAGCCACTGATAGCTGGCACGGTTCTCTAGCAACAGCTGCCATAATTGGATTCATGGGACCAATATCAGCAATAGGAGCTATTCTTACTGGTATTGACTATAGTGGTCTTGATCACATAATGGTTCTTGCCTGTGGTGGATTGATACCTAGCTTTGGAAATGTAGTAAAGAGAGCTCTAAGTTTGGACAAGAGGAAAAGCACCTGTGGCCTCATCATGGGTATTGGGTTTGCTACTTTATGTCTAACATTCACTAGGTTGGTTTGCTTACATACACCTTACTGCAATTCTGCACCAGAGGCTGTCAGATAA

Predicted protein sequences of Glyma18g44960

Limit To All Plant Sequences

>Glyma18g44960.1   sequence type=predicted peptide   gene model=Glyma18g44960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPNLRLRLCVPLLFLLLSFLLNSNAELDHQVSHKVIAAPHKDVGTNVIDGTGVENAFNFENANSVVGSRKGGSSKVSVSTVALFTLAMAAATGLGAVPFFFVELDPQWAGLCNGMAAGVMLAASFDLIQEGQEFGAGNWVVTGILAGGIFIWLCKKFLEQYGEVSMLDLKGADATKVVLVIGIMTLHSFGEGSGVGVSFAGSKGFTQGLLVTLAIAVHNIPEGLAVSMVLASRGVSPQNAMLWSIITSLPQPIVAVPSFICADAFSKFLPFCTGFAAGCMIWMVIAEVLPDAFKEASASQVASAATLSVAFMEALSTFFQNFSHDYNSEDASGFFVSLLFGLGPLLGGIILVVFALALRLQHALLMGTACGIAFVLGAWRPVQLILSSKLGLFPVLLLLAMGAAFIHVSSSGVLKVAASKKASVNDLPTLTGFPLSVHTLQSFISCGAVAFHALAEGLALGVAAPKAYGLGRHMVLPVSLHGLPRGAAVASCIFGATDSWHGSLATAAIIGFMGPISAIGAILTGIDYSGLDHIMVLACGGLIPSFGNVVKRALSLDKRKSTCGLIMGIGFATLCLTFTRLVCLHTPYCNSAPEAVR*

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