Glyma18g44940 - SoyBase

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Report for Sequence Feature Glyma18g44940

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54674840
stop:	54680094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32070	AT	Annotation by Michelle Graham. TAIR10: nuclear shuttle interacting \| chr1:11534851-11536289 REVERSE LENGTH=257	SoyBase	E_val: 4.00E-102	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009405	GO-bp	Annotation by Michelle Graham. GO Biological Process: pathogenesis	SoyBase	N/A	ISS
GO:0046739	GO-bp	Annotation by Michelle Graham. GO Biological Process: spread of virus in multicellular host	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity	SoyBase	N/A	ISS
PTHR13355	Panther	GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE	JGI		ISS
PF00583	PFAM	Acetyltransferase (GNAT) family	JGI		ISS
UniRef100_G7KY73	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetyltransferase NSI n=1 Tax=Medicago truncatula RepID=G7KY73_MEDTR	SoyBase	E_val: 2.00E-121	ISS
UniRef100_UPI000233E9A7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9A7 related cluster n=1 Tax=unknown RepID=UPI000233E9A7	SoyBase	E_val: 5.00E-160	ISS

Expression Patterns of Glyma18g44940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44940

Paralog	Evidence	Comments
Glyma09g40890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g216900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g44940

Limit To All Plant Sequences

>Glyma18g44940.2   sequence type=transcript   gene model=Glyma18g44940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCACTTTCACTTCTACTTCAATGTTGTTACCTACATTGCCTCCTTTTTTCTTTTGAGGGAAAGATAATTATATTAAATCACTGAGAATATAATGTTCAATACAAGAAGAAATATGATCAAAACAATGCTGACAAGCAAAGGATCTAGATACCCTAACCAAGGAATGAGCAACTTGATTGGCTTGTCGGCTCAAACTAAACACTACAGTTTTGTAAATTTGATATTTTATGGATGCAGCTTTTTATGATATCTCCTGCTTTGTTTGTTGTGGAAATTTCTGACCTTCATCATGTCAAGGATTTACTTGCAATCAGTCTCTATAGTGACACTTATCTGGTCTCGTGAAGATGACCAATCCAGAGTAACAAGAAGATCTCTAGATTCAGCCTCTAAATGAAAACTTGCTGGGTTGATTGCTGCAAACAAATGTTGATTGGCTTATCTATATCATCCCAGACCTTATCATTGCACCTTCTCCAAAACAAACACTTCAATCTTAGGATGCGAGAGTTGTTGAAGAGCAGCGAAGATGAAGGCTCTCATGTCATCCACTGATAGAGCTAGACAGTCCACCTTATGCTTCAATGATACCTCCTGCCAGACCTCTTTAGCTTGCTCACACCCAACAAAAACATGCCAATCATTTTCAACATATTCCCATCATATTCAAGGATTAATTTGATATTAAAGTTTAGAGATTAATTTTTTATTAAATGTTAACAAGACTAATTTTTCACATTTTTTATGAGATTAAATTTGAGTTTTTCATCTGACCAATTTTTTGGACCTCACATTTTCAGGGATAAATTTGAGTATTTATCCTAAAATCTACACAAAAGGAAAGGGAGTGCGTTTAGTAATTAGGAAAGTATAAACACCAATTATCCAGAATTGAAGAGAAGGGAAGAACGACAAAGTATGGCTGGGGACCGAGATACGCATACCATCATCATCATCATCTACATACATGCATCATCAGTCATCAACTGATAACTATCTGAGTGTTTGGTGGACAATACTGACACGCATCATCTCTCTCACACTCTCAAAATGCTAATCTTCAATGTCAATGCTATCTCTTCTTCGTTCTCAGTTGTTCAATTTCATGCCAATTATCCACTGTCTACTCAAACTCAATTCAACCAGAAAGTTCAAGTCTTTTCAGCTCAAGGCTGGATTCTGGGAATCAATTAAATCTGGGTTGATGAAGAATAACTCAATGCAAGTCATTGATCCACCCTCCACAGATGAAGAAAATGTAGAGCCTTTGTCTCAAGATTTTGTCCTTGTGGAAAAGACAGAACCCGATGGTACAATTGAGCAAATAATATTCTCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCAGAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCTGCAAAGGGACATTGGCAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGCTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCGAACCACTAATTGCAACCCTACCAAAGCTTTTTTTGCTTAGGTCAACAATGCAATTTGCAACCATGAAGTATACAAGAGAGAAGCAGTGACAAATTTATCTATCACTCATAATATGAAAGTAGAAAGGTTCAATCCAGTAATTATTGTGTTTTAGGTTTTATAAGTTATTCATTTTTCCAAAGTTTTGCTACTTTTCAAACAGATGATCATGATGAGGCTTTGATTAGTAGGCCTGCTTTATATTTGAAAAACATAAAATCCACCACTTACTGACTGTGGTTTTTTTTTTTTTCTTCATTTTTGGATGAATTATTGTACTATATAAGGTTAGTGGTTTTCTTCGGGCGTTTCTATGTTGAGTCTTAATAGGCATGAATTGTCAATGTAAAAGTTTCAAAATTATTATTTGATAGAGATTATTTTTGGCATAAATTTTAAAGGTTTAAATATGTTTTTA

Coding sequences of Glyma18g44940

Limit To All Plant Sequences

>Glyma18g44940.1   sequence type=CDS   gene model=Glyma18g44940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATTATCCACTGTCTACTCAAACTCAATTCAACCAGAAAGTTCAAGTCTTTTCAGCTCAAGGCTGGATTCTGGGAATCAATTAAATCTGGGTTGATGAAGAATAACTCAATGCAAGTCATTGATCCACCCTCCACAGATGAAGAAAATGTAGAGCCTTTGTCTCAAGATTTTGTCCTTGTGGAAAAGACAGAACCCGATGGTACAATTGAGCAAATAATATTCTCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCAGAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCTGCAAAGGGACATTGGCAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGCTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCGAACCACTAA

>Glyma18g44940.2   sequence type=CDS   gene model=Glyma18g44940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGCTATCTCTTCTTCGTTCTCAGTTGTTCAATTTCATGCCAATTATCCACTGTCTACTCAAACTCAATTCAACCAGAAAGTTCAAGTCTTTTCAGCTCAAGGCTGGATTCTGGGAATCAATTAAATCTGGGTTGATGAAGAATAACTCAATGCAAGTCATTGATCCACCCTCCACAGATGAAGAAAATGTAGAGCCTTTGTCTCAAGATTTTGTCCTTGTGGAAAAGACAGAACCCGATGGTACAATTGAGCAAATAATATTCTCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCAGAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCTGCAAAGGGACATTGGCAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGCTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCGAACCACTAA

Predicted protein sequences of Glyma18g44940

Limit To All Plant Sequences

>Glyma18g44940.1   sequence type=predicted peptide   gene model=Glyma18g44940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIIHCLLKLNSTRKFKSFQLKAGFWESIKSGLMKNNSMQVIDPPSTDEENVEPLSQDFVLVEKTEPDGTIEQIIFSSGGDVDVYDLQALCDKVGWPRRPLSKLAAALKNSYIVASLHSIRKSHGSEGNEQKRLIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALIEKLIRTLLQRDIGNITLFADSQVVEFYRNLGFEADPEGIKGMFWYPNH*

>Glyma18g44940.2   sequence type=predicted peptide   gene model=Glyma18g44940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLSLLRSQLFNFMPIIHCLLKLNSTRKFKSFQLKAGFWESIKSGLMKNNSMQVIDPPSTDEENVEPLSQDFVLVEKTEPDGTIEQIIFSSGGDVDVYDLQALCDKVGWPRRPLSKLAAALKNSYIVASLHSIRKSHGSEGNEQKRLIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALIEKLIRTLLQRDIGNITLFADSQVVEFYRNLGFEADPEGIKGMFWYPNH*

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