Glyma18g44910 - SoyBase

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Report for Sequence Feature Glyma18g44910

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54629217
stop:	54633784
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08570	AT	Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein \| chr3:2602258-2604412 REVERSE LENGTH=617	SoyBase	E_val: 0	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
PTHR13690	Panther	KELCH-RELATED	JGI		ISS
PTHR13690:SF174	Panther	KELCH-RELATED	JGI		ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
PF03000	PFAM	NPH3 family	JGI		ISS
UniRef100_G7KY72	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BTB/POZ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KY72_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DFC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFC3 related cluster n=1 Tax=unknown RepID=UPI000233DFC3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44910

Paralog	Evidence	Comments
Glyma09g40910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g216600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44910

Limit To All Plant Sequences

>Glyma18g44910.2   sequence type=CDS   gene model=Glyma18g44910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCTGAAACCTCACTCTCTTCTTCTAAACGCTCTCCAGCTACTCCTAAGTTCTGCAACTCATTCACTACTAGGATATTTGCTGATGTTGCTGGTGACATTACAATTGTCGTTGATGGCGAGTCTTTTCTTCTGCATAAGTTTCCCTTGGTGACTCTAAGTGGGAAGATCCGGAAGATGGTGGCTGAAGCCAAGGGTTCCAATGTTTCAAGCTTGGAGCTCATCAACTTTCCAGGGGGTCACCAGACATTTGAACTTGCCATGAAGTTCTGTTATGGAATGAATTTTGAGATTACAACATTTGATGTTGCGCGGCTTCGATGTGCAGCAGAGTACCTAGAAATGACAGAAGAATACAGGGAGCAAAACCTCATCTCAAGAACAGATATTTATCTGAATGAGATTGTATTTCAAAGTCTTCAGAAGTCAGTGGAAGTGCTATCCACCTGTGAGATGTTACCTCCAGATACAGTGGATGAAATTGAAATATCAAACGGATGCGTGGAAGCCATTGCAATGAATGCTTGCAAGGAGCAACTAGTTTCTGGTTTATCTAAATTAGACTGTGATGGTAAATCTGAAGAGCTAAAGGAGGATTGTGTTGCATGGTGGGTTGAAGATCTCTCGGTTTTGCGAATAGATTACTTCCAAAGAGTTATTTGTGCCATGGGAAGAATGGGGGTGAGATCGGACAGCATTATTGCATCACTGATGCATTATGCTCAATCATCATTAAAGGGCATTGGAAAGTGTCAATTTTGGAATCCATCAAGGACAAACTCAAGTCCAACTAGTGTAGAAAAGGACCAGAGGATAATTGTGGAAACTCTAGTAAGTCTCATGCCAACAGACAAAAGCTCTTCCATTCCATTGACATTTTTGTTTGGCATGTTAAAGATGGCTATCATGTTGGGTGCCACTATCCCCTGTAGGCTTGAGCTTGAAAGGAGGATCGCGTTACGGTTGGAAATGGTCTCACTAGATGATCTGCTTATACCATCTCTACAGAGTGGGGACTCCTTATTTGATGTTGATACAGTTCACAGGCTACTGGTGAATTTCTTGCAACGGGTTGAAGAGGAAGAAACCGAAGATTATGGGTATGAATCTGATGGGTTTTGTTCTTCTGGCCATGGTTCTCTGCTAAAAGTGGGACAGCTTATTGATGCTTATTTAGCAGAAATTGCTCCTGATCCCTACTTAAGTCTACAGAAATTCATTGCTTTGATTGAGATACTTCCTGATTATGCTCGTGTTATCGATGATGGCCTTTATAGAGCTGTGGACATTTATTTGAAGGCACATCCAGCACTAACAGAACAAGAATGCAAGAAGCTATGCAAGTTGATAGACTGCCAGAAGCTGTCTGAAGAAGCATGCAACCATGCAGCCCAGAATGACAGACTTCCACTGCAAATGGTGGTGCAAGTCTTGTACTTCGAGCAGCTGCGTTTGAAGAACGCGTTGTCGGGCAGTTCCGGAGACGGGCTGCTGTCGCAGAGAATAAGCAGTGGTGTTCCAAGTGCAGCCATGTCCCCTAGGGACAACTATGCTTCTCTGCGAAGAGAGAACCGGGAACTGAAGCTGGAGATTTCAAGAATGAGGGTGAGGCTGAGTGAGTTGGAGAAGGAGCAGATGTTCATGAAACAAGGCATCATTGACAAGGCAGGAAATGGAAGAACATTCTTAACCTCACTTTCTAAGGGAATAGGGAGAATTGCAATTTTTAGCAGTCAAGGCGGGGGAAAGCGCCAGAAATCAGCTGCTGAGCTAAGGTCGAATACTACACAGTGA

Predicted protein sequences of Glyma18g44910

Limit To All Plant Sequences

>Glyma18g44910.2   sequence type=predicted peptide   gene model=Glyma18g44910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSETSLSSSKRSPATPKFCNSFTTRIFADVAGDITIVVDGESFLLHKFPLVTLSGKIRKMVAEAKGSNVSSLELINFPGGHQTFELAMKFCYGMNFEITTFDVARLRCAAEYLEMTEEYREQNLISRTDIYLNEIVFQSLQKSVEVLSTCEMLPPDTVDEIEISNGCVEAIAMNACKEQLVSGLSKLDCDGKSEELKEDCVAWWVEDLSVLRIDYFQRVICAMGRMGVRSDSIIASLMHYAQSSLKGIGKCQFWNPSRTNSSPTSVEKDQRIIVETLVSLMPTDKSSSIPLTFLFGMLKMAIMLGATIPCRLELERRIALRLEMVSLDDLLIPSLQSGDSLFDVDTVHRLLVNFLQRVEEEETEDYGYESDGFCSSGHGSLLKVGQLIDAYLAEIAPDPYLSLQKFIALIEILPDYARVIDDGLYRAVDIYLKAHPALTEQECKKLCKLIDCQKLSEEACNHAAQNDRLPLQMVVQVLYFEQLRLKNALSGSSGDGLLSQRISSGVPSAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMFMKQGIIDKAGNGRTFLTSLSKGIGRIAIFSSQGGGKRQKSAAELRSNTTQ*

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