Glyma18g44900 - SoyBase

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Report for Sequence Feature Glyma18g44900

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54612626
stop:	54619988
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23660	AT	Annotation by Michelle Graham. TAIR10: polyprenyltransferase 1 \| chr4:12328086-12331359 REVERSE LENGTH=407	SoyBase	E_val: 2.00E-160	ISS
GO:0006744	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004659	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity	SoyBase	N/A	ISS
GO:0047293	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-hydroxybenzoate nonaprenyltransferase activity	SoyBase	N/A	ISS
KOG1381	KOG	Para-hydroxybenzoate-polyprenyl transferase	JGI		ISS
PTHR11048	Panther	PRENYLTRANSFERASES	JGI		ISS
PF01040	PFAM	UbiA prenyltransferase family	JGI		ISS
UniRef100_G7KY71	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Para-hydroxybenzoate-polyprenyltransferase n=1 Tax=Medicago truncatula RepID=G7KY71_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9A5 related cluster n=1 Tax=unknown RepID=UPI000233E9A5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44900

Paralog	Evidence	Comments
Glyma09g40921	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g216400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g44900

Limit To All Plant Sequences

>Glyma18g44900.3   sequence type=transcript   gene model=Glyma18g44900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTTTAAAATAATTTGAAACGAGAATAAAAAGAAAAAACCTGAATAGTAAAACTCCCACTTTTAACTCCCTTTCTCCGCCGTCGCATCGTTGCTGTCATACACCGCTGCCCCCGCCCATGTTGCACCTCCTTCCTCCATTTTTCAGTTTTTCTCCACTGTGCATCAGAATCCACTTTTCATGTATTCTAGAGCGTTCAATTTGAAGAGTTGCATTTGAGAAATGGCATCGGCTTTGATCTCGCGTTCTTCGCGTAGGTTTCTCAAACCTTGTTCTTCTTCGGTATCTCTTTACCCTGCCATCTTCAATCCTGTGATTTCTTCTCAACAATCGGCAAGCCAAAACCCCTCTCAAAATCCCCCATTCAAGCTACCCCAGCTCCAAAGTTTCAATTTTGAGTTCCGTAAAACTACTGGGTCTCTCTCAAGTTTCCACCTTGTTGCGCACGTGTCCACGTGGCCTTCCAAGGAGAACAAGAACCACCAAAGTGGTGGTAATGTGAGTAGTAGTTGGGTTGAATTGTACTTGCCTAGGAAGGTTCAGCCCTATGCTCGCCTTGCTCGCCTTGATAAGCCAATTGGGACATGGTTGCTTCTATGGCCTTGTATGTGGTCAATTACCCTGGCTACTACCCCAGGTCACCTTCCTGATTTTAAAATGTTGGCTCTGTTTGGATGTGGGGCTTTGCTTTTAAGAGGTGCCGGATGTACTATTAATGATCTCCTTGATCGGGATATTGATACAATGGTAGAACGGACAAAGTTGAGACCTGTGGCAAGTGGTCTTTTGACACCATTTCAAGGACTTTGTTTTCTTGGTTTTCAATTACTTTTGGGTCTTGGGATTCTTCTACAACTGAATAATTATAGCCGTGTTTTGGGTGCCTCATCCTTGTTGCTTGTCTTCTCCTATCCCCTCATGAAGAGGTTTACATTTTGGCCTCAAGCCTTTCTTGGGTTGACCTTTAACTGGGGGGCTTTGTTAGGATGGGCAGCAATTAAAGGAAGTCTGGATCCATCTATTGTGCTGCCACTCTATGCCTCTGGAGTATTTTGGACTCTTGTGTATGATACTATCTACGCACATCAGGACAAAGAAGATGACCTGAAAGTGGGAGTTAAATCAACAGCTTTGCGCTTTGGTGATTCAACAAAGGAGTGGATTACGGGGTTTGGGATTGCATGCCTTGGTGGTCTTGCTGTTAGTGGATTTAATGCTGAAATAGGCTGGCCATATTATGCATCTCTAGCAGTTGCGTCTGGACACTTGGGCTGGCAAATATGGACAGTCGACCTTTCTTCACGCGCTGACTGCAATAGGAAATTTGTTTCAAATAAGTGGTTTGGAGCTATCATATTTGGTGGAATTCTGGCTGGAAGACTTTCATCCTAGCGGCCCCTCAGGATATCATCCAGCGTATTAAATCTATTCCCCCTCCTTCCTTGGATGATGAGGAAGATGAGTCTGGCCTGGAAATCGTTTGGGTGAGTTTTCAGTCTGTAGTGCTTATAATCTGATCGCCAATGGATTGGATAGTCAAAGTGATACTGCGTGGAACAAAGTTTGGAAGCTCAAAGTTCCTCAGACTTCGGACTTTCATTTGGTTGATGAAACATGGTAGATTATCCACTGCTCAAAGGATTGCCAAGTGGAGTAGTTCAGCACCCACTTGCTATGATTGTTCTTCCATTAATGAGTCAATCCTTTATGTTTTTCCCTCCATTGCATATCGATTATGTGAGTGAGTGAGAAATTATATAAATATAAAATTATTCATATCATTATTATGATTTTTTTTCCTTCAGAATCATTGTTAGGATTATGTGCTATAAAACTAGACACATTTTTAATGATTTTAGAGTTAAGTTAATTAATTTATATTTTCTCTTATTTAGATTCTAATAA

Coding sequences of Glyma18g44900

Limit To All Plant Sequences

>Glyma18g44900.2   sequence type=CDS   gene model=Glyma18g44900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGGCTTTGATCTCGCGTTCTTCGCGTAGGTTTCTCAAACCTTGTTCTTCTTCGGTATCTCTTTACCCTGCCATCTTCAATCCTGTGATTTCTTCTCAACAATCGGCAAGCCAAAACCCCTCTCAAAATCCCCCATTCAAGCTACCCCAGCTCCAAAGTTTCAATTTTGAGTTCCGTAAAACTACTGGGTCTCTCTCAAGTTTCCACCTTGTTGCGCACGTGTCCACGTGGCCTTCCAAGGAGAACAAGAACCACCAAAGTGGTGGTAATGTGAGTAGTAGTTGGGTTGAATTGTACTTGCCTAGGAAGGTTCAGCCCTATGCTCGCCTTGCTCGCCTTGATAAGCCAATTGGGACATGGTTGCTTCTATGGCCTTGTATGTGGTCAATTACCCTGGCTACTACCCCAGGTCACCTTCCTGATTTTAAAATGTTGGCTCTGTTTGGATGTGGGGCTTTGCTTTTAAGAGGTGCCGGATGTACTATTAATGATCTCCTTGATCGGGATATTGATACAATGGTAGAACGGACAAAGTTGAGACCTGTGGCAAGTGGTCTTTTGACACCATTTCAAGGACTTTGTTTTCTTGGTTTTCAATTACTTTTGGGTCTTGGGATTCTTCTACAACTGAATAATTATAGCCGTGTTTTGGGTGCCTCATCCTTGTTGCTTGTCTTCTCCTATCCCCTCATGAAGAGGTTTACATTTTGGCCTCAAGCCTTTCTTGGGTTGACCTTTAACTGGGGGGCTTTGTTAGGATGGGCAGCAATTAAAGGAAGTCTGGATCCATCTATTGTGCTGCCACTCTATGCCTCTGGAGTATTTTGGACTCTTGTGTATGATACTATCTACGCACATCAGGACAAAGAAGATGACCTGAAAGTGGGAGTTAAATCAACAGCTTTGCGCTTTGGTGATTCAACAAAGGAGTGGATTACGGGGTTTGGGATTGCATGCCTTGGTGGTCTTGCTGTTAGTGGATTTAATGCTGAAATAGGCTGGCCATATTATGCATCTCTAGCAGTTGCGTCTGGACACTTGGGCTGGCAAATATGGACAGTCGACCTTTCTTCACGCGCTGACTGCAATAGGAAATTTGTTTCAAATAAGTGGTTTGGAGCTATCATATTTGGTGGAATTCTGGCTGGAAGACTTTCATCCTAG

>Glyma18g44900.3   sequence type=CDS   gene model=Glyma18g44900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGGCTTTGATCTCGCGTTCTTCGCGTAGGTTTCTCAAACCTTGTTCTTCTTCGGTATCTCTTTACCCTGCCATCTTCAATCCTGTGATTTCTTCTCAACAATCGGCAAGCCAAAACCCCTCTCAAAATCCCCCATTCAAGCTACCCCAGCTCCAAAGTTTCAATTTTGAGTTCCGTAAAACTACTGGGTCTCTCTCAAGTTTCCACCTTGTTGCGCACGTGTCCACGTGGCCTTCCAAGGAGAACAAGAACCACCAAAGTGGTGGTAATGTGAGTAGTAGTTGGGTTGAATTGTACTTGCCTAGGAAGGTTCAGCCCTATGCTCGCCTTGCTCGCCTTGATAAGCCAATTGGGACATGGTTGCTTCTATGGCCTTGTATGTGGTCAATTACCCTGGCTACTACCCCAGGTCACCTTCCTGATTTTAAAATGTTGGCTCTGTTTGGATGTGGGGCTTTGCTTTTAAGAGGTGCCGGATGTACTATTAATGATCTCCTTGATCGGGATATTGATACAATGGTAGAACGGACAAAGTTGAGACCTGTGGCAAGTGGTCTTTTGACACCATTTCAAGGACTTTGTTTTCTTGGTTTTCAATTACTTTTGGGTCTTGGGATTCTTCTACAACTGAATAATTATAGCCGTGTTTTGGGTGCCTCATCCTTGTTGCTTGTCTTCTCCTATCCCCTCATGAAGAGGTTTACATTTTGGCCTCAAGCCTTTCTTGGGTTGACCTTTAACTGGGGGGCTTTGTTAGGATGGGCAGCAATTAAAGGAAGTCTGGATCCATCTATTGTGCTGCCACTCTATGCCTCTGGAGTATTTTGGACTCTTGTGTATGATACTATCTACGCACATCAGGACAAAGAAGATGACCTGAAAGTGGGAGTTAAATCAACAGCTTTGCGCTTTGGTGATTCAACAAAGGAGTGGATTACGGGGTTTGGGATTGCATGCCTTGGTGGTCTTGCTGTTAGTGGATTTAATGCTGAAATAGGCTGGCCATATTATGCATCTCTAGCAGTTGCGTCTGGACACTTGGGCTGGCAAATATGGACAGTCGACCTTTCTTCACGCGCTGACTGCAATAGGAAATTTGTTTCAAATAAGTGGTTTGGAGCTATCATATTTGGTGGAATTCTGGCTGGAAGACTTTCATCCTAG

Predicted protein sequences of Glyma18g44900

Limit To All Plant Sequences

>Glyma18g44900.2   sequence type=predicted peptide   gene model=Glyma18g44900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASALISRSSRRFLKPCSSSVSLYPAIFNPVISSQQSASQNPSQNPPFKLPQLQSFNFEFRKTTGSLSSFHLVAHVSTWPSKENKNHQSGGNVSSSWVELYLPRKVQPYARLARLDKPIGTWLLLWPCMWSITLATTPGHLPDFKMLALFGCGALLLRGAGCTINDLLDRDIDTMVERTKLRPVASGLLTPFQGLCFLGFQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLMKRFTFWPQAFLGLTFNWGALLGWAAIKGSLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIACLGGLAVSGFNAEIGWPYYASLAVASGHLGWQIWTVDLSSRADCNRKFVSNKWFGAIIFGGILAGRLSS*

>Glyma18g44900.3   sequence type=predicted peptide   gene model=Glyma18g44900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASALISRSSRRFLKPCSSSVSLYPAIFNPVISSQQSASQNPSQNPPFKLPQLQSFNFEFRKTTGSLSSFHLVAHVSTWPSKENKNHQSGGNVSSSWVELYLPRKVQPYARLARLDKPIGTWLLLWPCMWSITLATTPGHLPDFKMLALFGCGALLLRGAGCTINDLLDRDIDTMVERTKLRPVASGLLTPFQGLCFLGFQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLMKRFTFWPQAFLGLTFNWGALLGWAAIKGSLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIACLGGLAVSGFNAEIGWPYYASLAVASGHLGWQIWTVDLSSRADCNRKFVSNKWFGAIIFGGILAGRLSS*

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