Glyma18g44880 - SoyBase

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Report for Sequence Feature Glyma18g44880

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54599972
stop:	54604907
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08670	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1); Has 48380 Blast hits to 29827 proteins in 1356 species: Archae - 46; Bacteria - 5589; Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses - 905; Other Eukaryotes - 9050 (source: NCBI BLink). \| chr3:2633946-2636536 FORWARD LENGTH=567	SoyBase	E_val: 6.00E-148	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_B9SRR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRR8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N3B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3B2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44880

Paralog	Evidence	Comments
Glyma09g40930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g216300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44880

Limit To All Plant Sequences

>Glyma18g44880.1   sequence type=CDS   gene model=Glyma18g44880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTGGTAGGAATGTGAGAGAGTCTCTATTGGGATCCCTCAACCATCACCGTAGAGGGCATAGTTTTAATGGGGTGGCCAACAACAACCACCACCACGATGACAACCTCGATCTTTTCTCCGACAACCGTCGCTCCCTCGCTCTTGCTGCTTCTTCTGATGACTCTTCAGATGTTTCGGTGAAACTGGGGAGGCTCTCAGTTGGAACAGCGAAACCGGTTAGAAGTGGGATTGATGATCTGTTATCATCTACAGAAGGAGGGAAGCATGATTATGACTGGCTTCTCACTCCCCCGGGGACCCCTGTTTTTCCATCAGAAGGAGAATCCCAAACAACCTTAGCTCCTCCAAGGAGAAGTTTGACTAGATCAACATCTACCTCTAAGGCCTCAAGGCTTGCAGTCTCACAATCAGAGAACAATCCCCCCTCTAGACCAGCAAGAAGCAGTTCAGTAACTCGCTCTTCCATTTCCACTTCACACTCACAGTACAGCTCCTATTCTTCAAACAGACACTCATCTTCAATCCTCAACACAAGTTCAGCCTCAGTTTCATCTTACATTAGACCATCTTCCCCCGTAACTCACTCTTCATCTGCAGCAAGGCCTTCCACTCCCTCGTCTCGCCCCACAGCATCGCGGTCCTCAACACCCTCCAAACCGCGTTCAGTTTCCACCAACTCTACTGCTGAAAAGAATAGACCATCATCACAAGGCTCAAGACCTTCCACTCCTAGTTCTAGGCCTCACATTCCTGCGAACTTGCATTCTCCATCTGCTTCATCAACTCGATCACTGTCTCGGCCTTCTACTCCCACACGTAGGAGCTCAATGCCATCTTTATCTCCATCACCTTCCCCTACGACAGGTTCTTTAACTTCAGCAGGCCGTGTTTCATCGAATGGACGCAGTTCAGCACCTGCATCAAGGCCAAGCTCACCAAGCCCGCGAGTTAGGCCTCCACCTCAGCCAATTGTTCCACCTGATTTCCCACTTGAAACACCACCAAACCTGAGAACAACATTGCCTGATAGGCCGGTTTCTGCAGGCCGATCACGTCCTGGTGGTGTCACTATGAAGGCAAATGTTTCTGAAACTCAAGCCTCCCCAGTTACTATGCCAAGGAGGCATTCATCTCCTATTGTTAGTAGGGGGAGAGTGACAGAACCTGCAGCAAAAACCCGTGGCTATTCCAATGGCCATCATGCTGATGCTTCTGAGCCTAGAAAAGTCTCACATGCTCCTGAGGTGGCTGCAAGGAAATCTATTAGGTCCTCAACTACTGCTCCTGACAACACTGGATTTGGGAGGACTATCTCAAAGAAATCCTTGGATATGGCTATTAAGCACATGGATATAAGGAACAGCTCAGGAAATATTCGTTCACTATCAAGCACCACACTCTTTCCTCAAAGTATTAGAACTTCCACTTCCAAATCTCATCGAGTCTCGAGTGCTCCAGCATCTGTTGACATGAATGGAAGCATGATAAGCAGTAAAAATGGAGCCAATTTTGATGTGGGAAATGGTATTGATAGGAATATGATGATGAAAGGAAGAGATGCAGATGAAAGACAATATTCTGCAAAACTGAGCGAAGTGGACATCTATGAGAGTTCTCGTTATGATGCACTATTGTTTAAAGAAGATTTGAAGAACACAAACTGGCTGCATGGTGCTGATGATAAGTGTGATCAAGGCCCCATATTTGATAATGGATTTGAGCACCTTCCTGAACCTTTTGGCCTCTTATAA

Predicted protein sequences of Glyma18g44880

Limit To All Plant Sequences

>Glyma18g44880.1   sequence type=predicted peptide   gene model=Glyma18g44880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSGRNVRESLLGSLNHHRRGHSFNGVANNNHHHDDNLDLFSDNRRSLALAASSDDSSDVSVKLGRLSVGTAKPVRSGIDDLLSSTEGGKHDYDWLLTPPGTPVFPSEGESQTTLAPPRRSLTRSTSTSKASRLAVSQSENNPPSRPARSSSVTRSSISTSHSQYSSYSSNRHSSSILNTSSASVSSYIRPSSPVTHSSSAARPSTPSSRPTASRSSTPSKPRSVSTNSTAEKNRPSSQGSRPSTPSSRPHIPANLHSPSASSTRSLSRPSTPTRRSSMPSLSPSPSPTTGSLTSAGRVSSNGRSSAPASRPSSPSPRVRPPPQPIVPPDFPLETPPNLRTTLPDRPVSAGRSRPGGVTMKANVSETQASPVTMPRRHSSPIVSRGRVTEPAAKTRGYSNGHHADASEPRKVSHAPEVAARKSIRSSTTAPDNTGFGRTISKKSLDMAIKHMDIRNSSGNIRSLSSTTLFPQSIRTSTSKSHRVSSAPASVDMNGSMISSKNGANFDVGNGIDRNMMMKGRDADERQYSAKLSEVDIYESSRYDALLFKEDLKNTNWLHGADDKCDQGPIFDNGFEHLPEPFGLL*

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