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Report for Sequence Feature Glyma18g44850

Feature Type:gene_model
Chromosome:Gm18
Start:54577751
stop:54581437
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g44850
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64230AT Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=157 SoyBaseE_val: 5.00E-104ISS
GO:0006301GO-bp Annotation by Michelle Graham. GO Biological Process: postreplication repair SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0044265GO-bp Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
KOG0417 KOG Ubiquitin-protein ligase JGI ISS
PTHR24068Panther FAMILY NOT NAMED JGI ISS
PF00179PFAM Ubiquitin-conjugating enzyme JGI ISS
UniRef100_B9T334UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme E2, putative n=1 Tax=Ricinus communis RepID=B9T334_RICCO SoyBaseE_val: 2.00E-101ISS
UniRef100_UPI0002338EA0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338EA0 related cluster n=1 Tax=unknown RepID=UPI0002338EA0 SoyBaseE_val: 4.00E-109ISS

Expression Patterns of Glyma18g44850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44850
ParalogEvidenceComments
Glyma09g40960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44850 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g216000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g44850
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g44850
>Glyma18g44850.3   sequence type=transcript   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGGTGTCATTTGGTGTGGGCATATATCCAACCAAAAAGGGACATTTTGCGGGTATTTGTGAGTGTGTGAGAGAGAGAGCGAGCAGTTTCAGACACAGAGAGAGGGGTTTGGGATTGGAGGGATTGACGCTGCGTCTCTTCCTCTTCTCTTTCGATCCATCCCTCATTCCTAATCCTCCAATCCAACCACCTCAGCCTCACACTCACATATACACATGTCTCTCTCTATTTCCCTTTTCACTTTCACTTTCATTTCTAGGGTTCCGTTCTGATGGCTCTTTCCCTTTCAGATCTGAACGCGTATCGTCCCTCCTATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGGTCCAGTAGCTGAGGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTCCCTCCGGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGGACTAAGGTGTTTCACCCGAACATCAATAGCAATGGTAGCATTTGTCTTGATATCCTGAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGATTTGTGTTTGGATAATGTATATTGAAATGGATTGCATCTATGAAAACTTTTGTGGGTTTGCTTTTCACTTCCTGTTTTCTGGGTAAGATTATGTTTCTGTTATGAGGGGCTAGGGAAGGGAGGTGTCTTAATTTGATAAAAAAAATAACTGTGTTCAACAACCACTGTGATGTTTTTATCATGATGCAAACGCATGAACAGGATGTTATTTGTGTCATTGCTGTGTTGTAACTTCCTCTATGAAGTAATGTAGAAATAGTCATATGAAGCACAGACCTTTCCCAATATGTTTTAATCAGCTTTTTCCAAGAAAAATAATCAGGTTTTTCGAAAGCATTTTTTGAATGCCAGTAAATTAAGT

>Glyma18g44850.4   sequence type=transcript   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGGTGTCATTTGGTGTGGGCATATATCCAACCAAAAAGGGACATTTTGCGGGTATTTGTGAGTGTGTGAGAGAGAGAGCGAGCAGTTTCAGACACAGAGAGAGGGGTTTGGGATTGGAGGGATTGACGCTGCGTCTCTTCCTCTTCTCTTTCGATCCATCCCTCATTCCTAATCCTCCAATCCAACCACCTCAGCCTCACACTCACATATACACATATCTGAACGCGTATCGTCCCTCCTATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGGTCCAGTAGCTGAGGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTCCCTCCGGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGGACTAAGGTGTTTCACCCGAACATCAATAGCAATGGTAGCATTTGTCTTGATATCCTGAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGATTTGTGTTTGGATAATGTATATTGAAATGGATTGCATCTATGAAAACTTTTGTGGGTTTGCTTTTCACTTCCTGTTTTCTGGGTAAGATTATGTTTCTGTTATGAGGGGCTAGGGAAGGGAGGTGTCTTAATTTGATAAAAAAAATAACTGTGTTCAACAACCACTGTGATGTTTTTATCATGATGCAAACGCATGAACAGGATGTTATTTGTGTCATTGCTGTGTTGTAACTTCCTCTATGAAGTAATGTAGAAATAGTCATATGAAGCACAGACCTTTCCCAATATGTTTTAATCAGCTTTTTCCAAGAAAAATAATCAGGTTTTTCGAAAGCATTTTTTGAATGCCAGTAAATTAAGT

>Glyma18g44850.5   sequence type=transcript   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGGTGTCATTTGGTGTGGGCATATATCCAACCAAAAAGGGACATTTTGCGGGTATTTGTGAGTGTGTGAGAGAGAGAGCGAGCAGTTTCAGACACAGAGAGAGGGGTTTGGGATTGGAGGGATTGACGCTGCGTCTCTTCCTCTTCTCTTTCGATCCATCCCTCATTCCTAATCCTCCAATCCAACCACCTCAGCCTCACACTCACATATACACATATCTGAACGCGTATCGTCCCTCCTATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGTAGCTGAGGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTCCCTCCGGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGGACTAAGGTGTTTCACCCGAACATCAATAGCAATGGTAGCATTTGTCTTGATATCCTGAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGATTTGTGTTTGGATAATGTATATTGAAATGGATTGCATCTATGAAAACTTTTGTGGGTTTGCTTTTCACTTCCTGTTTTCTGGGTAAGATTATGTTTCTGTTATGAGGGGCTAGGGAAGGGAGGTGTCTTAATTTGATAAAAAAAATAACTGTGTTCAACAACCACTGTGATGTTTTTATCATGATGCAAACGCATGAACAGGATGTTATTTGTGTCATTGCTGTGTTGTAACTTCCTCTATGAAGTAATGTAGAAATAGTCATATGAAGCACAGACCTTTCCCAATATGTTTTAATCAGCTTTTTCCAAGAAAAATAATCAGGTTTTTCGAAAGCATTTTTTGAATGCCAGTAAATTAAGT
Coding sequences of Glyma18g44850
>Glyma18g44850.2   sequence type=CDS   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGTATGTGCAAATACAAATGTTTATTTTGTAGGTCCAGTAGCTGAGGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTCCCTCCGGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGGACTAAGGTGTTTCACCCGAACATCAATAGCAATGGTAGCATTTGTCTTGATATCCTGAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGA

>Glyma18g44850.3   sequence type=CDS   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGGTCCAGTAGCTGAGGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTCCCTCCGGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGGACTAAGGTGTTTCACCCGAACATCAATAGCAATGGTAGCATTTGTCTTGATATCCTGAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGA

>Glyma18g44850.4   sequence type=CDS   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGGTCCAGTAGCTGAGGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTCCCTCCGGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGGACTAAGGTGTTTCACCCGAACATCAATAGCAATGGTAGCATTTGTCTTGATATCCTGAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGA

>Glyma18g44850.5   sequence type=CDS   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGTAGCTGAGGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTCCCTCCGGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGGACTAAGGTGTTTCACCCGAACATCAATAGCAATGGTAGCATTTGTCTTGATATCCTGAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGA
Predicted protein sequences of Glyma18g44850
>Glyma18g44850.2   sequence type=predicted peptide   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAVCANTNVYFVGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*

>Glyma18g44850.3   sequence type=predicted peptide   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*

>Glyma18g44850.4   sequence type=predicted peptide   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*

>Glyma18g44850.5   sequence type=predicted peptide   gene model=Glyma18g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*






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