SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g44820

Feature Type:gene_model
Chromosome:Gm18
Start:54553609
stop:54557532
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g44820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08380AT Annotation by Michelle Graham. TAIR10: alpha-galactosidase 1 | chr5:2694851-2697616 REVERSE LENGTH=410 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005990GO-bp Annotation by Michelle Graham. GO Biological Process: lactose catabolic process SoyBaseN/AISS
GO:0009311GO-bp Annotation by Michelle Graham. GO Biological Process: oligosaccharide metabolic process SoyBaseN/AISS
GO:0016139GO-bp Annotation by Michelle Graham. GO Biological Process: glycoside catabolic process SoyBaseN/AISS
GO:0046477GO-bp Annotation by Michelle Graham. GO Biological Process: glycosylceramide catabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004557GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-galactosidase activity SoyBaseN/AISS
KOG2366 KOG Alpha-D-galactosidase (melibiase) JGI ISS
PTHR11452Panther ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE JGI ISS
PF02065PFAM Melibiase JGI ISS
UniRef100_I1N3A6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3A6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q5ZP79UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alpha-galactosidase 1 n=1 Tax=Pisum sativum RepID=Q5ZP79_PEA SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g44820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44820
ParalogEvidenceComments
Glyma09g40990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g215700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g44820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g44820
>Glyma18g44820.2   sequence type=transcript   gene model=Glyma18g44820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAATAGATAAGGGATCTTGTCTTTCTCACAGCAAGTGAAGAGGTGGTGAAGTGAACACAATGGAGAGAAGGGTTGGCTATGAGGTGCTGGTGGCTTTGGTGACCCTTTTGGTTTTCTCATTTGCTTGTGCCACTGCTTCATCATCAGGACCAACAAAACTCCACCACCGTGTGGAGCAATTCAGGAGGAATCTGCTTGCTAATGGCCTTGGTAGAACTCCTCCAATGGGGTGGAACAGTTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGCTGATGCCCTTGTTTCTACTGGTCTGTCCAAGCTTGGATACACTTATGTCAATATAGATGATTGTTGGGCTGAATTAAATCGGGATGCTAAGGGTAATCTGGTAGCAAAAAATTCAACGTTTCCTTCTGGAATCAAAGCTCTTGCAGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTTGCATCATGGGGTATTGATTATTTGAAGTATGATAACTGTAACAATGATGGATCAAAACCAACTGATAGATACCCTATTATGACTCGGGCTTTAATGATGGCTGGTCGTCCAATCTTCTTCTCACTATGTGAATGGGGAGACTTACACCCAGCTCTATGGGGTGCTAAAGTGGGAAACAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGCATGGTTTCAAGGGCAGATATGAATGAAGTTTATGCAGAGTATGCAAGACCTGGTGGTTGGAATGATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGGTGAGTTGAATTTGGAACACAACAATGGCTTTGTCTCTAGTGTCAGATGAACAATACATGATCATTCACAGGTAAC
Coding sequences of Glyma18g44820
>Glyma18g44820.1   sequence type=CDS   gene model=Glyma18g44820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAAGGGTTGGCTATGAGGTGCTGGTGGCTTTGGTGACCCTTTTGGTTTTCTCATTTGCTTGTGCCACTGCTTCATCATCAGGACCAACAAAACTCCACCACCGTGTGGAGCAATTCAGGAGGAATCTGCTTGCTAATGGCCTTGGTAGAACTCCTCCAATGGGGTGGAACAGTTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGCTGATGCCCTTGTTTCTACTGGTCTGTCCAAGCTTGGATACACTTATGTCAATATAGATGATTGTTGGGCTGAATTAAATCGGGATGCTAAGGGTAATCTGGTAGCAAAAAATTCAACGTTTCCTTCTGGAATCAAAGCTCTTGCAGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTTGCATCATGGGGTATTGATTATTTGAAGTATGATAACTGTAACAATGATGGATCAAAACCAACTGATAGATACCCTATTATGACTCGGGCTTTAATGATGGCTGGTCGTCCAATCTTCTTCTCACTATGTGAATGGGGAGACTTACACCCAGCTCTATGGGGTGCTAAAGTGGGAAACAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGCATGGTTTCAAGGGCAGATATGAATGAAGTTTATGCAGAGTATGCAAGACCTGGTGGTTGGAATGATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGATTTGGGCAGGTCCTCTTTCAGGGTACAGGGTAGCTGTTGTCTTGCTTAATCGTGGCCCTTCGAAAATCTCAATTACAGCCAACTGGGATGACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGATCCACATGGGTGTAAAATGTACGTGCTGAAGCCAGTGGCTTGA

>Glyma18g44820.2   sequence type=CDS   gene model=Glyma18g44820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAAGGGTTGGCTATGAGGTGCTGGTGGCTTTGGTGACCCTTTTGGTTTTCTCATTTGCTTGTGCCACTGCTTCATCATCAGGACCAACAAAACTCCACCACCGTGTGGAGCAATTCAGGAGGAATCTGCTTGCTAATGGCCTTGGTAGAACTCCTCCAATGGGGTGGAACAGTTGGAATCATTTCAGCTGTCAAATTAACGAAAAAATGATCAGAGAAACTGCTGATGCCCTTGTTTCTACTGGTCTGTCCAAGCTTGGATACACTTATGTCAATATAGATGATTGTTGGGCTGAATTAAATCGGGATGCTAAGGGTAATCTGGTAGCAAAAAATTCAACGTTTCCTTCTGGAATCAAAGCTCTTGCAGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTTGCATCATGGGGTATTGATTATTTGAAGTATGATAACTGTAACAATGATGGATCAAAACCAACTGATAGATACCCTATTATGACTCGGGCTTTAATGATGGCTGGTCGTCCAATCTTCTTCTCACTATGTGAATGGGGAGACTTACACCCAGCTCTATGGGGTGCTAAAGTGGGAAACAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGCATGGTTTCAAGGGCAGATATGAATGAAGTTTATGCAGAGTATGCAAGACCTGGTGGTTGGAATGATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGGTGAGTTGA
Predicted protein sequences of Glyma18g44820
>Glyma18g44820.1   sequence type=predicted peptide   gene model=Glyma18g44820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERRVGYEVLVALVTLLVFSFACATASSSGPTKLHHRVEQFRRNLLANGLGRTPPMGWNSWNHFSCQINEKMIRETADALVSTGLSKLGYTYVNIDDCWAELNRDAKGNLVAKNSTFPSGIKALADYVHGKGLKLGIYSDAGYFTCSKQMPGSLGHEFQDAKTFASWGIDYLKYDNCNNDGSKPTDRYPIMTRALMMAGRPIFFSLCEWGDLHPALWGAKVGNSWRTTNDINDSWESMVSRADMNEVYAEYARPGGWNDPDMLEVGNGGMTKNEYIVHFSLWALSKAPLLLGCDVRNMTKETMEIVANKEVISVNQDPLGVQGKKVRMEGDQEIWAGPLSGYRVAVVLLNRGPSKISITANWDDIDIPPKSAVEARDLWEHKTLMRPFVDKLTATVDPHGCKMYVLKPVA*

>Glyma18g44820.2   sequence type=predicted peptide   gene model=Glyma18g44820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERRVGYEVLVALVTLLVFSFACATASSSGPTKLHHRVEQFRRNLLANGLGRTPPMGWNSWNHFSCQINEKMIRETADALVSTGLSKLGYTYVNIDDCWAELNRDAKGNLVAKNSTFPSGIKALADYVHGKGLKLGIYSDAGYFTCSKQMPGSLGHEFQDAKTFASWGIDYLKYDNCNNDGSKPTDRYPIMTRALMMAGRPIFFSLCEWGDLHPALWGAKVGNSWRTTNDINDSWESMVSRADMNEVYAEYARPGGWNDPDMLEVGNGGMTKNEYIVHFSLWALSKAPLLLGCDVRNMTKETMEIVANKEVISVNQDPLGVQGKKVRMEGDQEVS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo