Glyma18g44780 - SoyBase

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Report for Sequence Feature Glyma18g44780

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54520275
stop:	54521408
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30400	AT	Annotation by Michelle Graham. TAIR10: ovate family protein 2 \| chr2:12956592-12957554 FORWARD LENGTH=320	SoyBase	E_val: 1.00E-40	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048513	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04844	PFAM	Protein of unknown function, DUF623	JGI		ISS
UniRef100_G7K0S1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plant-specific domain TIGR01568 family protein n=1 Tax=Medicago truncatula RepID=G7K0S1_MEDTR	SoyBase	E_val: 5.00E-65	ISS
UniRef100_I1N3A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N3A2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44780

Paralog	Evidence	Comments
Glyma09g41280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g215300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44780

Limit To All Plant Sequences

>Glyma18g44780.1   sequence type=CDS   gene model=Glyma18g44780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAACTACAGGTTCAGATTATCAGATATGATCCCCAATGCCTGGTTTTACAAACTCAAGGACATGGGAAAAACAAGAAAGCAAACCCCAACAACTCATTCCAGGAAGAAAAAGCAACCTTCACCAGCCTCAACCCAAAAAGCATCAAAACCAAAGCAACCACACCAATACAATCTCAGAAAGTCTTACTATTTCACAAGGGAGCTTACCCCAAATGATAGAATCTACTCCTCACCAACACCAACAAATAACCAAAATGCCAAATACACCAATTCCCTTGAACCCCCCAGAAAATCATCCAAACAAAGACTCAAGAAAAGAACTTCAAGGACTTCTTCTCCTAAGCTTGTTGTTGTCTCTAACAATAACAACTCCTCATCACCAAATGATAGCTCCACTGAATCAGAGTACCCTGACCCAGAATTCAGAACAGACCGTGTTCTTCCAACTGAATCATTCGATGAAACGGTTCCTTGGGCCAACTCTTGTGCCTGCAGGGTACACTCCAACGCCAAGGACATCATCATTGATGTTGACAACAATTCCATAGCCAGAAAAGATGGTAAGCTAGAAGGGTATGAGTATGAATGTGATTCCTTCTCAGACCTTGTGCTTCCACCAATTGTGACCAAGCCTGCAATATTCAATGACTTGCTCAGTGATGTCAAGAAGAAAGAAACCAAACCAAGAAGCAAAATGGCTGCACATGAAGAGCCAAACCTGAATAAGGGGCCTCTGAGAGTTAAAATTGTGAAGGAAGACACTTCATCAATGAAGGAACATAAGAACACCTACGGAAGGAGATTCTCTGTGAGCTCTCCGGGAGTGAGGCTTAGAATGAACTCGCCGCGAATTGCGAGCCGGAGAATTCAGGCACATGGCCGGAGAAGCGTGTCCTCGGCCCCCCGGAGAAGCCTCTCGGATAGCTTTGCAGTTGTGAAGTCATCACTGAATCCACAGAGGGATTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAACAACATAAGGACATCAAAGGATTTGGAGGATCTTCTTGCTTGCTACCTTTCTTTGAATTCAGATGAGTATCACGATCTCATTATCAAAGTGTTCAAGCAAATATGGTTTGATTTAACTGATAATAACTAG

Predicted protein sequences of Glyma18g44780

Limit To All Plant Sequences

>Glyma18g44780.1   sequence type=predicted peptide   gene model=Glyma18g44780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNYRFRLSDMIPNAWFYKLKDMGKTRKQTPTTHSRKKKQPSPASTQKASKPKQPHQYNLRKSYYFTRELTPNDRIYSSPTPTNNQNAKYTNSLEPPRKSSKQRLKKRTSRTSSPKLVVVSNNNNSSSPNDSSTESEYPDPEFRTDRVLPTESFDETVPWANSCACRVHSNAKDIIIDVDNNSIARKDGKLEGYEYECDSFSDLVLPPIVTKPAIFNDLLSDVKKKETKPRSKMAAHEEPNLNKGPLRVKIVKEDTSSMKEHKNTYGRRFSVSSPGVRLRMNSPRIASRRIQAHGRRSVSSAPRRSLSDSFAVVKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDNN*

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