Report for Sequence Feature Glyma18g44770
Feature Type: gene_model
Chromosome: Gm18
Start: 54492925
stop: 54496548
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g44770
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G38500 AT
Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:16117610-16119041 REVERSE LENGTH=356
SoyBase E_val: 1.00E-61 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_G7LGM7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase n=1 Tax=Medicago truncatula RepID=G7LGM7_MEDTR
SoyBase E_val: 1.00E-15 ISS
UniRef100_I1N3A1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N3A1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g44770
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g44770
Paralog Evidence Comments
Glyma09g41275 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g44770 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g215200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g44770
Coding sequences of Glyma18g44770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g44770.1 sequence type=CDS gene model=Glyma18g44770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGTTCGCGCGATGCAACAGCCAGATTCCGGCGCCGCTGCCGTCGCCGATTCCGACCGGGAGAGGCACGCGGTCCGCCGCGAACGAGATCTTCAGCCAGTTTCTCGAGAAGACGCTGCAGATCCCGGAGCTGACGCTGCCGGGACCGCACCTCCCGCCCGCGCCGGCGGAGATCGACTTCCGGTCGCTGACTCTTGTCTCCACCGATCTGATGCTGCGCTCTGCCAGGGAGTTCGGCGCGTTCCGAATCCGGTGCCACGGGATCTCCGGCAGCGAACTCGGAACCATGGCGGACGAAGCCGAACGCGTCTTCCAGAAATCGCGAAACGTCGTCGTCGTGGAGCGCAACGGAACTGGCGGAGAGATGATTCCCTGTGTTCGCTCCAGCAAAGGTGCACTGGAATTCGCCGCTCAGACGATTACCGGCGACCAAACGCATCGGAACTTTTGGGTTCACATGGGGAACGTTGCAAGTAGATTGGATACTATAGTTGAGCAAGTGACTATGGTTCTACAACACAAAACATCTAAAGAGTTTAAGGAGCGGATTCAAGATACAGAGTCTTGGATTTGCTTGTGCAGGTATCCGCATGATAATGTTCCCAAACAAAACGAAGACACCTCGGTTAAGAAAAAAGACAAATTATGTGATCATGCTTTGCGCTTCTACCTTCCTATGGAGCAATGTATATTTTACGTCCAAACTGAAAGAGGTCCCCTGTCATTTGACGCAGGTCCAGAGAACATAGTTGTCACCGTTGGCAAACAACTAGAGGAGTGGAGCCACGGTGTATTCAAATGTGTTCCTGGGGAAATGATCTTCATGCCGAGTTTCCAGAGTAGCCCTGCCTCTTTCTCCATAGAGCTTGTGTGCTTGGCCTCTTCAAATGATCTAAGTCACAGTTTAGACAATTCTGACAACTGTGACAAGATAATATCCTTGGCTGATCAAATCCTTATTGTATTTTGTCTGGTATTTTTATACAATTTTTTATACTTCGTTTTTTCCTGA
Predicted protein sequences of Glyma18g44770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g44770.1 sequence type=predicted peptide gene model=Glyma18g44770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPFARCNSQIPAPLPSPIPTGRGTRSAANEIFSQFLEKTLQIPELTLPGPHLPPAPAEIDFRSLTLVSTDLMLRSAREFGAFRIRCHGISGSELGTMADEAERVFQKSRNVVVVERNGTGGEMIPCVRSSKGALEFAAQTITGDQTHRNFWVHMGNVASRLDTIVEQVTMVLQHKTSKEFKERIQDTESWICLCRYPHDNVPKQNEDTSVKKKDKLCDHALRFYLPMEQCIFYVQTERGPLSFDAGPENIVVTVGKQLEEWSHGVFKCVPGEMIFMPSFQSSPASFSIELVCLASSNDLSHSLDNSDNCDKIISLADQILIVFCLVFLYNFLYFVFS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
