SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51630 | AT | Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 5 | chr3:19149487-19151924 FORWARD LENGTH=549 | SoyBase | E_val: 8.00E-179 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0043424 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding | SoyBase | N/A | ISS |
| KOG0198 | KOG | MEKK and related serine/threonine protein kinases | JGI | ISS | |
| PTHR13902 | Panther | SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED | JGI | ISS | |
| PTHR13902:SF35 | Panther | WNK5 (ARABIDOPSIS WNK KINASE 5) | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_C0M0Q1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C0M0Q1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7KX47 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: With no lysine kinase n=1 Tax=Medicago truncatula RepID=G7KX47_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma18g44761 not represented in the dataset |
Glyma18g44761 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g41270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g215100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g44761.1 sequence type=CDS gene model=Glyma18g44761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATTGCCTGATACAATCAGTACAGCCATGTACAAAGGGAGATTCTGCACTAGTGGTGGAGTTAAGTCTCAGCTTGGTTATGTTGAAACAGATCCATCTGGTCGATATGGTCGTTTCAGGGATGTTCTGGGGAAAGGAGCAATGAAGACTGTGTATAGGGCATTTGATGAGTTACTAGGGATTGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTCTTTCACTCACCAGAGCAACTCCAGCGCCTTTATTCAGAGGTTCATCTCCTTAAGCACCTCAACCATGACTCTATGATGATCTTCTATGGTTCTTGGATCGATGTCAACAACAAAACCTTTAACTTTGTCACTGAATTGTTCACCTCCGGCACCCTTAGAGAGTATAGGCAGAAGTACAAGAGAGTTGATATCACAGCAGTTAAGAATTGGGCTCGCCAGATTCTAAGTGGTTTGGAGTATTTACACAGCCATAATCCTCCTGTGATACATAGAGATCTCAAATGTGACAACATCTTTGTCAATGGCCATCAGGGGAGGGTCAAGATTGGTGATTTAGGCCTGGCAGCTATACTTAAAAGCTCCCAACATGCACACAGTGTCATAGGCACACCAGAATTCATGGCACCAGAACTGTATGAAGAGAAATACAACGAGCTGGTAGATATATACTCCTTCGGTATGTGTATGATAGAGATGCTTACTTTTGAGTTCCCATACAGTGAGTGTGCCAACCCAGCTCAAATATACAAGAAAGTTACTTCGGGAAAGATACCTGAAGCTTTTTACAGAATCGAAAATTTGGAAGCCCAGAAGTTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGACCATCAGCGAAGGAGCTCTTGTTGGACCCTTTCTTAGCCATGGAACAACTTGAAATTCAATTGCCACCAAGCATACCAGCATTATTTACAAATAAATCTTTCAAGCTTAGTTGCCCTGCACCATTTCCCAGTGAGCATCGCGATCAAACAAAGAGCGCGGATATGACAATCACCGGGTCAATAAACGAAGAGGACAACACTGTTTTCCTTAAAGTTCGGATATCTGACATAATGGGGCACACAAGACATGTGTTCTTCCCATTCGACACATTAAAGGACACGGCTATTCAGGTGGCAATGGAGATGACCCATTTTCGTGGAAACCATTGCCCTTTTACTCAAGAATGGCCTCAAGATGATCCATTCATGAACGACGACGCAAGCTCTCAAGCCTCAATGAACTCCTTCAAGTGTTCGAGTTTCCAGTTCTGCGACCCGGGCCACGAAGATGAGCACGCCACCCCAACAGACGGACCCGAACGCAAAAAGTGCACACCATTATTATCGTACCGTATCGAAGAACCAGAACCCAATTTCACGAAACCGTTTAACTACTACCCTCCTCGTATGAACTCTTCGTGCGGCTGCAGCAGGTTCGGGTCGAGCCACGCGTGTCCGAGGCTTACGAGGATCCGGTCGTGCCCGCACGAGCGGAGGAGCCAGCAGCAGCGGTCGATGATGTTGGAGGAGATGTACAAGTATAAGAGACGCTTTTTCAACACCGTTGGCGCTGTTGAGAACATCGGTTTTCAGCATCCAGATCGCGTGTAG
>Glyma18g44761.1 sequence type=predicted peptide gene model=Glyma18g44761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELPDTISTAMYKGRFCTSGGVKSQLGYVETDPSGRYGRFRDVLGKGAMKTVYRAFDELLGIEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKHLNHDSMMIFYGSWIDVNNKTFNFVTELFTSGTLREYRQKYKRVDITAVKNWARQILSGLEYLHSHNPPVIHRDLKCDNIFVNGHQGRVKIGDLGLAAILKSSQHAHSVIGTPEFMAPELYEEKYNELVDIYSFGMCMIEMLTFEFPYSECANPAQIYKKVTSGKIPEAFYRIENLEAQKFVGKCLANVSERPSAKELLLDPFLAMEQLEIQLPPSIPALFTNKSFKLSCPAPFPSEHRDQTKSADMTITGSINEEDNTVFLKVRISDIMGHTRHVFFPFDTLKDTAIQVAMEMTHFRGNHCPFTQEWPQDDPFMNDDASSQASMNSFKCSSFQFCDPGHEDEHATPTDGPERKKCTPLLSYRIEEPEPNFTKPFNYYPPRMNSSCGCSRFGSSHACPRLTRIRSCPHERRSQQQRSMMLEEMYKYKRRFFNTVGAVENIGFQHPDRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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