Glyma18g44750 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g44750

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54474895
stop:	54480250
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51610	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). \| chr3:19139715-19141986 REVERSE LENGTH=230	SoyBase	E_val: 3.00E-114	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TDW7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TDW7_SOYBN	SoyBase	E_val: 5.00E-162	ISS

Expression Patterns of Glyma18g44750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44750

Paralog	Evidence	Comments
Glyma09g41260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g215000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g44750

Limit To All Plant Sequences

>Glyma18g44750.2   sequence type=transcript   gene model=Glyma18g44750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAACGAAGTGCTTGGAGCTCCAAAACGGAGCGTTATGCCAATACGACATCGTGTGTCAGAGTCTGAAACCTGAAACCTGAAACGCTGAAGCTGAGTTGGAGTCACAGTTGTTGTTGGTAGCCATGGATGCAGTAGCTACGGCGAAACCGCTTCTGTCACTGTCGTTTTTGCTTTTGCTACCGTCTTTTCTTCCGATCGCCGTCGCTTACAGACCCGGCGACATCGTTCCCATGAGCCGCATGGGTCAATACCACTCCTCGCGAACCGTGTGGCAGGACCTCATTGGCCGTCACTGCCCCATCTTCGCAGTGAATCGCGAGGTGTTGATGCCCATACCCAAGCCCACGGGTTACACTGGTGCGGATGCTTATAAAATATCGTTTCAAGTTGGCAGGGAAAAGTTTTTAATCCCGTGGCTTCTTGTGGTGAATCGAAAAAGCACGGAGGTCCCAATGATTGAAGTAGATCTGAGGTATTCAGGAAGTGATTTGCATGGTGTCACAGCTAAAGTTGTGGATATGCCTCATCACTATGTTGAAGTTCATCCTGAGATTCGTAAACAATTCTGGGATTCTCAGCATTGGCCAAAGCATATACTTGTCCGATATACATGGTCTCATGTTGTCTTTCATCCTTTCAATCTACGTATTGCAATCATCACGTGACAAATTGGAAAGATTTGTAAGGGAAACGGTTGTAGAAAGCAGCGTGCCTGGTGAGGTGGTAGCAAAGGTTGAATGATGCATCCCTGGTGTCAATGATGCAATGTATAACATTGTAATATTGTATTCGTGAATTGACAAGATCAATTTTGGAGGAGGGGGAGAAGGGAATGTTGTTCTTGCATATACAAAGCTATGAACCAGTTGTTTCTTTTCTTGATGAAGGAGGTGACTCAGGTGAGTGAGTTGGATTGGATTAATTTTATCAGGACGAACTGTGGAGTGAGAGGCAGTAAAAGTTGAGAGATTGGGTGTATTAATTCATAGGGAAGGCTGGCTTTGTAACAATACATGAGGTTAAATACTTGAAAAGCTATAAAAGAATAAATCAAAATGTAGGGTATTAATTTCGCAATCATTTGAATCTTATTAATAAATTTGAATCAACACTCGAAGATAATATCCCTCCCTGTCTAGTAGATGAAATTTAATAACTTCTGATTTTGCCCCTAAAGACTCGTCATTTATTTGTTCTGTAACTTGAGAGATTCTAGTAATACATTTTTTCGAACACTGTAGTTAGTTAAAATTTATTAGAAATTATAAAATTTTG

Coding sequences of Glyma18g44750

Limit To All Plant Sequences

>Glyma18g44750.1   sequence type=CDS   gene model=Glyma18g44750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGTAGCTACGGCGAAACCGCTTCTGTCACTGTCGTTTTTGCTTTTGCTACCGTCTTTTCTTCCGATCGCCGTCGCTTACAGACCCGGCGACATCGTTCCCATGAGCCGCATGGGTCAATACCACTCCTCGCGAACCGTGTGGCAGGACCTCATTGGCCGTCACTGCCCCATCTTCGCAGTGAATCGCGAGGTGTTGATGCCCATACCCAAGCCCACGGGTTACACTGGTGCGGATGCTTATAAAATATCGTTTCAAGTTGGCAGGGAAAAGTTTTTAATCCCGTGGCTTCTTGTGGTGAATCGAAAAAGCACGGAGGTCCCAATGATTGAAGTAGATCTGAGGTATTCAGGAAGTGATTTGCATGGTGTCACAGCTAAAGTTGTGGATATGCCTCATCACTATGTTGAAGTTCATCCTGAGATTCGTAAACAATTCTGGGATTCTCAGCATTGGCCAAAGCATATACTTGTCCGATATACATGGAAGGAACATTCAGAGATAGATGTAACTTCAGGATTTTTTGTTCTGTTTGGTTCAGGTCTCATGTTGTCTTTCATCCTTTCAATCTACGTATTGCAATCATCACGTGACAAATTGGAAAGATTTGTAAGGGAAACGGTTGTAGAAAGCAGCGTGCCTGGTGAGGTGGTAGCAAAGGTTGAATGA

>Glyma18g44750.2   sequence type=CDS   gene model=Glyma18g44750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGTAGCTACGGCGAAACCGCTTCTGTCACTGTCGTTTTTGCTTTTGCTACCGTCTTTTCTTCCGATCGCCGTCGCTTACAGACCCGGCGACATCGTTCCCATGAGCCGCATGGGTCAATACCACTCCTCGCGAACCGTGTGGCAGGACCTCATTGGCCGTCACTGCCCCATCTTCGCAGTGAATCGCGAGGTGTTGATGCCCATACCCAAGCCCACGGGTTACACTGGTGCGGATGCTTATAAAATATCGTTTCAAGTTGGCAGGGAAAAGTTTTTAATCCCGTGGCTTCTTGTGGTGAATCGAAAAAGCACGGAGGTCCCAATGATTGAAGTAGATCTGAGGTATTCAGGAAGTGATTTGCATGGTGTCACAGCTAAAGTTGTGGATATGCCTCATCACTATGTTGAAGTTCATCCTGAGATTCGTAAACAATTCTGGGATTCTCAGCATTGGCCAAAGCATATACTTGTCCGATATACATGGTCTCATGTTGTCTTTCATCCTTTCAATCTACGTATTGCAATCATCACGTGA

Predicted protein sequences of Glyma18g44750

Limit To All Plant Sequences

>Glyma18g44750.1   sequence type=predicted peptide   gene model=Glyma18g44750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAVATAKPLLSLSFLLLLPSFLPIAVAYRPGDIVPMSRMGQYHSSRTVWQDLIGRHCPIFAVNREVLMPIPKPTGYTGADAYKISFQVGREKFLIPWLLVVNRKSTEVPMIEVDLRYSGSDLHGVTAKVVDMPHHYVEVHPEIRKQFWDSQHWPKHILVRYTWKEHSEIDVTSGFFVLFGSGLMLSFILSIYVLQSSRDKLERFVRETVVESSVPGEVVAKVE*

>Glyma18g44750.2   sequence type=predicted peptide   gene model=Glyma18g44750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAVATAKPLLSLSFLLLLPSFLPIAVAYRPGDIVPMSRMGQYHSSRTVWQDLIGRHCPIFAVNREVLMPIPKPTGYTGADAYKISFQVGREKFLIPWLLVVNRKSTEVPMIEVDLRYSGSDLHGVTAKVVDMPHHYVEVHPEIRKQFWDSQHWPKHILVRYTWSHVVFHPFNLRIAIIT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain