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Report for Sequence Feature Glyma18g44660

Feature Type:gene_model
Chromosome:Gm18
Start:54396338
stop:54397553
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g44660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03110AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:730346-731197 FORWARD LENGTH=283 SoyBaseE_val: 6.00E-16ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1N392UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N392_SOYBN SoyBaseE_val: 8.00E-129ISS
UniRef100_Q9LYX4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 n=1 Tax=Arabidopsis thaliana RepID=Q9LYX4_ARATH SoyBaseE_val: 3.00E-13ISS

Expression Patterns of Glyma18g44660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g44660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g214400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g44660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g44660
>Glyma18g44660.2   sequence type=CDS   gene model=Glyma18g44660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCATAAGGAAAAAAAACACCACCACCATCGAAACCCAAACCCAGGAACCCTCTTCCTCCAAGGTCACGTGCATGGGCCAGGTCCGAGTCAAACGCCCTTCCAAACAAGGCGCCACCACCAAACGTGACTTAGCTCCCACGCGCTGCCGCTGCCGCTGCAACTGCTGTTGGATCCGAAGCCCCAACAACCACCCCTGCCGCTGCAAACCCCTCTGGCCCAACTGGCCCAGCCTCTTCCGTCGAAAGCCCACCAAGCTCAAACATCCCTCCGAGCCCGAGCGCAATTTTCACGACGAAGAATCAGAATTACCGTTCCATGAGAGAGTGAATGTCGATAAGGATAGTGATTTTGCTTCCAATTCAAGCACGCCCCCGAGAAACGCTTTGCTTTTAACTCGCTGTAGATCCGCGCCGTACAGATCTTCCTCTTTGGCTAGTAGGTTCCGGAGTTCTCCCGTTAAGGACCAAGAAACGGAGTTTCCAATTCCGAACACGACGGAACAACAACACACTTCCGAGGAACCCCAAACGGAACCCGAATTAGGTTTTCTCAGAGAAAAAATTGCTTCACTCACCGAACCGAAAAAGGTTGAGGAAGTTGAAACAGAGAGAAATTGA
Predicted protein sequences of Glyma18g44660
>Glyma18g44660.2   sequence type=predicted peptide   gene model=Glyma18g44660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFIRKKNTTTIETQTQEPSSSKVTCMGQVRVKRPSKQGATTKRDLAPTRCRCRCNCCWIRSPNNHPCRCKPLWPNWPSLFRRKPTKLKHPSEPERNFHDEESELPFHERVNVDKDSDFASNSSTPPRNALLLTRCRSAPYRSSSLASRFRSSPVKDQETEFPIPNTTEQQHTSEEPQTEPELGFLREKIASLTEPKKVEEVETERN*






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