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Report for Sequence Feature Glyma18g44591

Feature Type:gene_model
Chromosome:Gm18
Start:54319933
stop:54324610
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g44591
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38550AT Annotation by Michelle Graham. TAIR10: Transmembrane proteins 14C | chr2:16132178-16134229 FORWARD LENGTH=335 SoyBaseE_val: 5.00E-79ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
KOG4267 KOG Predicted membrane protein JGI ISS
PF03647PFAM Transmembrane proteins 14C JGI ISS
UniRef100_Q39364UniRef Annotation by Michelle Graham. Most informative UniRef hit: Non-green plastid inner envelope membrane protein n=1 Tax=Brassica oleracea RepID=Q39364_BRAOL SoyBaseE_val: 9.00E-78ISS
UniRef100_UPI0001BA64A0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001BA64A0 related cluster n=1 Tax=unknown RepID=UPI0001BA64A0 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g44591
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g44591 not represented in the dataset
Glyma18g44591 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44591
ParalogEvidenceComments
Glyma09g41100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44591 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g213500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g44591
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g44591
>Glyma18g44591.2   sequence type=transcript   gene model=Glyma18g44591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGGAAAAGGAGGTGACAAAATGAGAATGAAGAATTTGCTATTGCTTGGACTTGGGGGATTCGGGGCCCAACGGAACATAGCATAGTATTTGATGTTGATGAATAGTACGTAATAGGGGTCACCCTCTCACCTCCAATTCTCGTTCTCGCAGCAAACAAACAAACCCCCCACCCAACGCATTCTTCAATCTTCCCCTTCGCGTCTTTTGGGTGGTTTGGTTTAGGACATTTCACAAACACCTCCTCTCCCCTCCATTTTCCATTTCCATTCTTCTCTCCACTATAAATTCTCCTTCTCTTTCTTTCTCGTAATCTTCGCCTCCCTTCAACTCCACCCTCTCTCCTTCTTACCTCCTTGACCATGATGAGTTTCGCCATGGATTCAGTTTCGGTGTTAAACCCTAAACTCTCCCACTCCCATTCCTCTCTCCCATTCAGCAGGTTCCCCCATTCCCTCAACTTCCACCCCTTACTCAAACCCCGCGCAGTTAACGCCGCCGTCCCCCCTAACGGCCTCGCCGCCTGCTTCCTCACCCTCCACCGACGGAAACCGTTAACCGTCGCTTTCACAGCTTCTCACCAAGACTCGGAACACAGAGAGATTGAAGTGGAGAAGGAGCGTGACGTCCATGCAGGCTCTGAAGAATCTCAGGAAGCGTGGAAGCAGGTTCTGGAGACGTTTAGGGAACAGGCAGAGAAGTTTCAGGGCGTTTCTCAAGAGGCTTATGAGGTGTATTCTAAGAAGGCTGCTGTCATTCTGACAGATGCCACGGAGCAGTTAAAGGTGCTGGCAGATAAGACAAAGAACGAGTTGAGTGTGGCAGCAAAGGAAATCACTGACGAAGGGAAAGAGTATTTGTCTGCAGCGGCGGATAGTTCACCAGAGGTGAAGGAGATTGTGGAAACGTTTACCTCACCGCCTGAGGATATTCAGAAATTGTCTGGAGTGAGGGACTTCTATGTTGGTGTACCTTATGGTTTGATGCTTTCTCTTGGTGGCTTCCTTTCCTTTATGGTAACTGGCAACACTGCAGCGATAAGGTTTGGGGTGATTTTAGGTGGTGTCCTCCTGGCTTTAAGCATTTTAAGTCTGAAATCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGCTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGGATCATCTTATTTCACTGCCTTGATCAGTGGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATCAAAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGTGTAAAAAATTGAAGATCTGCATGAAGATCAGGTAAAATACTGAAGATCGAGTTGAAGATAGTCAGTAAATTTTGGTGATCATTTTTTATCATATAGTTTTTCACGGGCTGGGTCATCAAGACTAGAGACTCACTGCTAAGGGTTATGGTTTCATACCTTGAAAAACGGAGCTCGGAGAATCTGGAAATAATTTCTAGTTGTGGTTTTTTTCTGGAAAATTACTAATATCATATTATGAGTAACCTTAACCGGTTACAGATTCTAATGTACAAGAAAAAATTAGATATGGTGTTTAGGGCTTTGTCTTCTTCAAATTGCACTTATAAAACATTAAAATAAGTACCTGCTGCTTGCATTTTTAACCCCACAAGTGAGTGAAATTTAAACACTTAATAGTTACGTAAGCCTGGAATTGTGAACTAATAAGATAAGATTAG

>Glyma18g44591.3   sequence type=transcript   gene model=Glyma18g44591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGGAAAAGGAGGTGACAAAATGAGAATGAAGAATTTGCTATTGCTTGGACTTGGGGGATTCGGGGCCCAACGGAACATAGCATAGTATTTGATGTTGATGAATAGTACGTAATAGGGGTCACCCTCTCACCTCCAATTCTCGTTCTCGCAGCAAACAAACAAACCCCCCACCCAACGCATTCTTCAATCTTCCCCTTCGCGTCTTTTGGGTGGTTTGGTTTAGGACATTTCACAAACACCTCCTCTCCCCTCCATTTTCCATTTCCATTCTTCTCTCCACTATAAATTCTCCTTCTCTTTCTTTCTCGTAATCTTCGCCTCCCTTCAACTCCACCCTCTCTCCTTCTTACCTCCTTGACCATGATGAGTTTCGCCATGGATTCAGTTTCGGTGTTAAACCCTAAACTCTCCCACTCCCATTCCTCTCTCCCATTCAGCAGGTTCCCCCATTCCCTCAACTTCCACCCCTTACTCAAACCCCGCGCAGTTAACGCCGCCGTCCCCCCTAACGGCCTCGCCGCCTGCTTCCTCACCCTCCACCGACGGAAACCGTTAACCGTCGCTTTCACAGCTTCTCACCAAGACTCGGAACACAGAGAGATTGAAGTGGAGAAGGAGCGTGACGTCCATGCAGGCTCTGAAGAATCTCAGGAAGCGTGGAAGCAGGTTCTGGAGACGTTTAGGGAACAGGCAGAGAAGTTTCAGGGCGTTTCTCAAGAGGCTTATGAGGTGTATTCTAAGAAGGCTGCTGTCATTCTGACAGATGCCACGGAGCAGTTAAAGGTGCTGGCAGATAAGACAAAGAACGAGTTGAGTGTGGCAGCAAAGGAAATCACTGACGAAGGGAAAGAGTATTTGTCTGCAGCGGCGGATAGTTCACCAGAGGTGAAGGAGATTGTGGAAACGTTTACCTCACCGCCTGAGGATATTCAGAAATTGTCTGGAGTGAGGGACTTCTATGTTGGTGTACCTTATGGTTTGATGCTTTCTCTTGGTGGCTTCCTTTCCTTTATGGTAACTGGCAACACTGCAGCGATAAGGTTTGGGGTGATTTTAGGTGGTGTCCTCCTGGCTTTAAGCATTTTAAGTCTGAAATCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGCTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGTAAGGCTTTATATTGAATATTTATCAAAATTAATTTAATTTCCATCCCAAGAAAATTAAAATTAGTTTCAAACATTTGATATTTTCTCATTCTTGTTTTCTTTTTCCCAGGGATCATCTTATTTCACTGCCTTGATCAGGTTCTTGAAACTTCAATATTATTTAACTTTGTATATGAACTTTTTTATCTTCATTTTTGGAGTTAATTGTTTCACTAGTGTTTTTGTTTTCCCACTG
Coding sequences of Glyma18g44591
>Glyma18g44591.1   sequence type=CDS   gene model=Glyma18g44591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTTTCGCCATGGATTCAGTTTCGGTGTTAAACCCTAAACTCTCCCACTCCCATTCCTCTCTCCCATTCAGCAGGTTCCCCCATTCCCTCAACTTCCACCCCTTACTCAAACCCCGCGCAGTTAACGCCGCCGTCCCCCCTAACGGCCTCGCCGCCTGCTTCCTCACCCTCCACCGACGGAAACCGTTAACCGTCGCTTTCACAGCTTCTCACCAAGACTCGGAACACAGAGAGATTGAAGTGGAGAAGGAGCGTGACGTCCATGCAGGCTCTGAAGAATCTCAGGAAGCGTGGAAGCAGGTTCTGGAGACGTTTAGGGAACAGGCAGAGAAGTTTCAGGGCGTTTCTCAAGAGGCTTATGAGGTGTATTCTAAGAAGGCTGCTGTCATTCTGACAGATGCCACGGAGCAGTTAAAGGTGCTGGCAGATAAGACAAAGAACGAGTTGAGTGTGGCAGCAAAGGAAATCACTGACGAAGGGAAAGAGTATTTGTCTGCAGCGGCGGATAGTTCACCAGAGGTGAAGGAGATTGTGGAAACGTTTACCTCACCGCCTGAGGATATTCAGAAATTGTCTGGAGTGAGGGACTTCTATGTTGGTGTACCTTATGGTTTGATGCTTTCTCTTGGTGGCTTCCTTTCCTTTATGGTAACTGGCAACACTGCAGCGATAAGGTTTGGGGTGATTTTAGGTGGTGTCCTCCTGGCTTTAAGCATTTTAAGTCTGAAATCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGCTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGGATCATCTTATTTCACTGCCTTGATCAGTGGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATCAAAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAG

>Glyma18g44591.2   sequence type=CDS   gene model=Glyma18g44591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTTTCGCCATGGATTCAGTTTCGGTGTTAAACCCTAAACTCTCCCACTCCCATTCCTCTCTCCCATTCAGCAGGTTCCCCCATTCCCTCAACTTCCACCCCTTACTCAAACCCCGCGCAGTTAACGCCGCCGTCCCCCCTAACGGCCTCGCCGCCTGCTTCCTCACCCTCCACCGACGGAAACCGTTAACCGTCGCTTTCACAGCTTCTCACCAAGACTCGGAACACAGAGAGATTGAAGTGGAGAAGGAGCGTGACGTCCATGCAGGCTCTGAAGAATCTCAGGAAGCGTGGAAGCAGGTTCTGGAGACGTTTAGGGAACAGGCAGAGAAGTTTCAGGGCGTTTCTCAAGAGGCTTATGAGGTGTATTCTAAGAAGGCTGCTGTCATTCTGACAGATGCCACGGAGCAGTTAAAGGTGCTGGCAGATAAGACAAAGAACGAGTTGAGTGTGGCAGCAAAGGAAATCACTGACGAAGGGAAAGAGTATTTGTCTGCAGCGGCGGATAGTTCACCAGAGGTGAAGGAGATTGTGGAAACGTTTACCTCACCGCCTGAGGATATTCAGAAATTGTCTGGAGTGAGGGACTTCTATGTTGGTGTACCTTATGGTTTGATGCTTTCTCTTGGTGGCTTCCTTTCCTTTATGGTAACTGGCAACACTGCAGCGATAAGGTTTGGGGTGATTTTAGGTGGTGTCCTCCTGGCTTTAAGCATTTTAAGTCTGAAATCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGCTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGGATCATCTTATTTCACTGCCTTGATCAGTGGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATCAAAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAG

>Glyma18g44591.3   sequence type=CDS   gene model=Glyma18g44591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTTTCGCCATGGATTCAGTTTCGGTGTTAAACCCTAAACTCTCCCACTCCCATTCCTCTCTCCCATTCAGCAGGTTCCCCCATTCCCTCAACTTCCACCCCTTACTCAAACCCCGCGCAGTTAACGCCGCCGTCCCCCCTAACGGCCTCGCCGCCTGCTTCCTCACCCTCCACCGACGGAAACCGTTAACCGTCGCTTTCACAGCTTCTCACCAAGACTCGGAACACAGAGAGATTGAAGTGGAGAAGGAGCGTGACGTCCATGCAGGCTCTGAAGAATCTCAGGAAGCGTGGAAGCAGGTTCTGGAGACGTTTAGGGAACAGGCAGAGAAGTTTCAGGGCGTTTCTCAAGAGGCTTATGAGGTGTATTCTAAGAAGGCTGCTGTCATTCTGACAGATGCCACGGAGCAGTTAAAGGTGCTGGCAGATAAGACAAAGAACGAGTTGAGTGTGGCAGCAAAGGAAATCACTGACGAAGGGAAAGAGTATTTGTCTGCAGCGGCGGATAGTTCACCAGAGGTGAAGGAGATTGTGGAAACGTTTACCTCACCGCCTGAGGATATTCAGAAATTGTCTGGAGTGAGGGACTTCTATGTTGGTGTACCTTATGGTTTGATGCTTTCTCTTGGTGGCTTCCTTTCCTTTATGGTAACTGGCAACACTGCAGCGATAAGGTTTGGGGTGATTTTAGGTGGTGTCCTCCTGGCTTTAAGCATTTTAAGTCTGAAATCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGCTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGTAAGGCTTTATATTGAATATTTATCAAAATTAATTTAA
Predicted protein sequences of Glyma18g44591
>Glyma18g44591.1   sequence type=predicted peptide   gene model=Glyma18g44591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSFAMDSVSVLNPKLSHSHSSLPFSRFPHSLNFHPLLKPRAVNAAVPPNGLAACFLTLHRRKPLTVAFTASHQDSEHREIEVEKERDVHAGSEESQEAWKQVLETFREQAEKFQGVSQEAYEVYSKKAAVILTDATEQLKVLADKTKNELSVAAKEITDEGKEYLSAAADSSPEVKEIVETFTSPPEDIQKLSGVRDFYVGVPYGLMLSLGGFLSFMVTGNTAAIRFGVILGGVLLALSILSLKSYKKGRTSPLALKGQAAIASILFLREISSIGKGSSYFTALISGAVVAFYIYRIVLERNHQKSSNLETEPGN*

>Glyma18g44591.2   sequence type=predicted peptide   gene model=Glyma18g44591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSFAMDSVSVLNPKLSHSHSSLPFSRFPHSLNFHPLLKPRAVNAAVPPNGLAACFLTLHRRKPLTVAFTASHQDSEHREIEVEKERDVHAGSEESQEAWKQVLETFREQAEKFQGVSQEAYEVYSKKAAVILTDATEQLKVLADKTKNELSVAAKEITDEGKEYLSAAADSSPEVKEIVETFTSPPEDIQKLSGVRDFYVGVPYGLMLSLGGFLSFMVTGNTAAIRFGVILGGVLLALSILSLKSYKKGRTSPLALKGQAAIASILFLREISSIGKGSSYFTALISGAVVAFYIYRIVLERNHQKSSNLETEPGN*

>Glyma18g44591.3   sequence type=predicted peptide   gene model=Glyma18g44591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSFAMDSVSVLNPKLSHSHSSLPFSRFPHSLNFHPLLKPRAVNAAVPPNGLAACFLTLHRRKPLTVAFTASHQDSEHREIEVEKERDVHAGSEESQEAWKQVLETFREQAEKFQGVSQEAYEVYSKKAAVILTDATEQLKVLADKTKNELSVAAKEITDEGKEYLSAAADSSPEVKEIVETFTSPPEDIQKLSGVRDFYVGVPYGLMLSLGGFLSFMVTGNTAAIRFGVILGGVLLALSILSLKSYKKGRTSPLALKGQAAIASILFLREISSIGKVRLYIEYLSKLI*






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