Glyma18g44580 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g44580

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54311361
stop:	54318130
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52850	AT	Annotation by Michelle Graham. TAIR10: vacuolar sorting receptor homolog 1 \| chr3:19587999-19591690 FORWARD LENGTH=623	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006896	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi to vacuole transport	SoyBase	N/A	ISS
GO:0007034	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuolar transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0017119	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi transport complex	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0009940	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino-terminal vacuolar sorting propeptide binding	SoyBase	N/A	ISS
PTHR22765	Panther	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	JGI		ISS
PTHR22765:SF8	Panther	VSR-2 (VACUOLAR SORTING RECEPTOR 2), CALCIUM ION B	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
PF07645	PFAM	Calcium-binding EGF domain	JGI		ISS
UniRef100_I1N383	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N383_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93X09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar sorting receptor n=1 Tax=Vigna mungo RepID=Q93X09_VIGMU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44580

Paralog	Evidence	Comments
Glyma09g41070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g213400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44580

Limit To All Plant Sequences

>Glyma18g44580.1   sequence type=CDS   gene model=Glyma18g44580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGTGCAAAGCTGGGTCTTTTGTTGTGTGTTTGTGTTTTGCTGTTGGGGTGTTGTGTCGGTAGATTTGTGGTGGAGAAGAACAGTTTGAAGGTGACTTCGCCCAAGTCGTTGAAGGGTACATATGAATGTGCAATTGGGAATTTTGGGGTTCCCAAGTATGGAGGAACATTGGTTGGTTCCGTTTTGTACCCGAAGGTGAATCAGAAAGGGTGCACGAACTTCAGTGATGTCAATTTTCAGTCCAAGCCAGGAGGGCTTCCCACTTTTCTTCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCGTGGAATGCACAGAATGGTGGAGCAGCGGCTATTCTTGTAGCTGATGACAAGGCAGAAACATTGATCACTATGGACACTCCTGAAGAAGGGAAAGCAAATGATGATTATGTGGACAAGATTAGTATTCCTTCTGCTCTTATCAGCAAATCCCTGGGGGATAGTATCAAGCAGGCTCTCTCTGATGGGGAGATGGTTAACATAAATCTGGATTGGAGAGAGTCTCTTCCGCATCCTGATGATAGAGTTGAGTACGAGCTATGGACCAATAGCAACGATGAGTGTGGGCCAAAGTGTGACAGTCTAATTAATTTTCTGAAGGACTTTAAAGGGGTAGCTCAGCAGCTGGAGAAGAGAGGGTTCACTCAATTTACCCCTCGCTATATAACTTGGTTTTGTCCTGAAGCATTTCTCTTGAGCAGACAGTGCAAATCTCAGTGCATAAACAATGGAAGGTACTGTGCTCCTGATCCTGAGCAAGATTTCAGTAGAGGGTATGATGGTAAAGATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTATAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTTACCGACTTTTCAATCCGTTGCCCCATGAAAGAGAATAAGTACACAGAAGAATGTTCAGATCAAGTTATTAAATCTCTTGGTGTTGACCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCACGCAGATATAGAAAATCCTGTCCTAAAGGCTGAACAGGATGCACAGATTGGTAAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGGTAAGTTGTCAAGACCTGCTGTTCTCAAGGCAATCTGTTCAGGCTTCCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGACCTCGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTTCTAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCAATTGTTCAAAATGTGAAATTTGTTGGAGATGGATATACCCACTGTGAAGCTTCAGGATCCTTGAGTTGTCAATTCAACAATGGTGGTTGTTGGAAGGGAGTACAAGGTGGCAGGGCTTACTCGGCTTGTCTTGATGACTATAGAAAAGGTTGTACATGTCCACCTGGGTTCAGAGGAGATGGAGTTCAGTCATGTGAAGATATTGATGAGTGCAAAGAGAAAACAGCCTGTCAATGCCCAGGTTGCAAATGCAAAAACACCTGGGGAAGTTACGAGTGCAAATGCAAAAGTGGTTTGTTCTACTCGCGAGAAAATGACACGTGTTTTGGTGAATATTCTGCTTCAGTGCTGAATATCTGGGTGATTATCCTCGTATTGGTTGTTGCTGTTGCGGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCGGAGATACGTGCAATTATGGCTCAGTACATGCCTTTGGATAATCAACCTGAGGTCTCTAATCAAGTTCATCACAATATCTAG

Predicted protein sequences of Glyma18g44580

Limit To All Plant Sequences

>Glyma18g44580.1   sequence type=predicted peptide   gene model=Glyma18g44580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGAKLGLLLCVCVLLLGCCVGRFVVEKNSLKVTSPKSLKGTYECAIGNFGVPKYGGTLVGSVLYPKVNQKGCTNFSDVNFQSKPGGLPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKAETLITMDTPEEGKANDDYVDKISIPSALISKSLGDSIKQALSDGEMVNINLDWRESLPHPDDRVEYELWTNSNDECGPKCDSLINFLKDFKGVAQQLEKRGFTQFTPRYITWFCPEAFLLSRQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFYKVANESGKPWQWWDYVTDFSIRCPMKENKYTEECSDQVIKSLGVDLKKIKDCVGDPHADIENPVLKAEQDAQIGKGSRGDVTILPTLVINNRQYRGKLSRPAVLKAICSGFLETTEPSICLTSDLETNECLENNGGCWQDKSSNITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGSLSCQFNNGGCWKGVQGGRAYSACLDDYRKGCTCPPGFRGDGVQSCEDIDECKEKTACQCPGCKCKNTWGSYECKCKSGLFYSRENDTCFGEYSASVLNIWVIILVLVVAVAGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEVSNQVHHNI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain