Glyma18g44540 - SoyBase

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Report for Sequence Feature Glyma18g44540

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54250150
stop:	54251399
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01910	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). \| chr5:357950-358655 REVERSE LENGTH=180	SoyBase	E_val: 7.00E-26	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L6Z5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L6Z5_SOYBN	SoyBase	E_val: 2.00E-113	ISS

Expression Patterns of Glyma18g44540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44540

Paralog	Evidence	Comments
Glyma09g41030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g213000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g44540

Limit To All Plant Sequences

>Glyma18g44540.3   sequence type=transcript   gene model=Glyma18g44540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTATTCATCCCTTCCTTTCACTTCTCCTTCAAACCACAATCCCAAACCAATAGCAAACAAACCAAACACGACATAAACGCAAATGCTAACTCCGACCACCGGAGTACCGAAGCGCCGGCCGCGATCTGGCCGGACGCCGCTTCAGCTCAAGAACACTCCTGCCGATCCCATTCATCCTTCCGCGAAGCCCAAGCCCAAGCCCAAGCCGTATTTCGAGATTTCATTGATCGACAAAGAGAACAATCCGGTTGCCGCCGTCGCGGTTCTGGTGGCGCAGCCGCCGGAGACGTCGCTGGCGGAGGAGCTCAGCGCGGTCAAGAAGAAGCTGGAGAGAATGAGAGCGGACAAAGAAAAAACGGAGAAAATGCTGAACGAGAAACACGCAATACTGGACGCGAAGATGAAGGAGATGGAAGAGCGAGGTGAGATTCAGAAGAACCTCGAGATCGAGGTTGACCGGTTGTTCCGGTTGAAGGAACTCAAGTATCGCTGCATGGTTCGCGCAACAACTACATCACATTTTCTGTTCGATTCGTTTTTCAAGTTCGATTTCTCGATGCTGATATTTTTATTCATTGGAACAGAGAGTTTCTCCGATGAGAACGCTTAGGGAGAAGGAACAAGGAAAGATCGTGAACGAAGCGCCATCGCAATCGGAGGTGAAAACGGAGGAAACAGTGGCGTCGGAATCTGAATCGGAATCGGAATCGGAATCTGTTGGAGGCGAATGCCAAGTTCTGCAGAGTCCAGGTTCAGCTTGTTCACAAACTCATACTCCACATACAAAATCAGATAGTTGAAACTGAGTATCTTGATGGAATTTTCCATACATAATTGCTCGTTATGTTTGTTTTTTTCTTAAAAAAAGTATGTAAATTTCACATTGCAATTAATTTGTACCTTTATTTCATTATTATTACTATTTCTTGTTAAGAAAGAAAATGGCTCAAAGTATTATATTGCCGATAAACTTGAGCATTCTTTGTAACTTTATTATACTTCTCTCGTGTTTTGCTATTGTTCGACGATCACAGCGTATATATGTAATTTGAATGATAAAAAAAATATAAATGGTTTTGTTCCGAAAGCATTGATTCTTAGTGCAAAAAGGGAATTGTGAAGTATTTAAATTTGAAAATTGAAA

Coding sequences of Glyma18g44540

Limit To All Plant Sequences

>Glyma18g44540.2   sequence type=CDS   gene model=Glyma18g44540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAACTCCGACCACCGGAGTACCGAAGCGCCGGCCGCGATCTGGCCGGACGCCGCTTCAGCTCAAGAACACTCCTGCCGATCCCATTCATCCTTCCGCGAAGCCCAAGCCCAAGCCCAAGCCGTATTTCGAGATTTCATTGATCGACAAAGAGAACAATCCGGTTGCCGCCGTCGCGGTTCTGGTGGCGCAGCCGCCGGAGACGTCGCTGGCGGAGGAGCTCAGCGCGGTCAAGAAGAAGCTGGAGAGAATGAGAGCGGACAAAGAAAAAACGGAGAAAATGCTGAACGAGAAACACGCAATACTGGACGCGAAGATGAAGGAGATGGAAGAGCGAGGTGAGATTCAGAAGAACCTCGAGATCGAGGTTGACCGGTTGTTCCGGTTGAAGGAACTCAAGTATCGCTGCATGAGAGTTTCTCCGATGAGAACGCTTAGGGAGAAGGAACAAGGAAAGATCGTGAACGAAGCGCCATCGCAATCGGAGGTGAAAACGGAGGAAACAGTGGCGTCGGAATCTGAATCGGAATCGGAATCGGAATCTGTTGGAGGCGAATGCCAAGTTCTGCAGAGTCCAGGTTCAGCTTGTTCACAAACTCATACTCCACATACAAAATCAGATAGTTGA

>Glyma18g44540.3   sequence type=CDS   gene model=Glyma18g44540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAACTCCGACCACCGGAGTACCGAAGCGCCGGCCGCGATCTGGCCGGACGCCGCTTCAGCTCAAGAACACTCCTGCCGATCCCATTCATCCTTCCGCGAAGCCCAAGCCCAAGCCCAAGCCGTATTTCGAGATTTCATTGATCGACAAAGAGAACAATCCGGTTGCCGCCGTCGCGGTTCTGGTGGCGCAGCCGCCGGAGACGTCGCTGGCGGAGGAGCTCAGCGCGGTCAAGAAGAAGCTGGAGAGAATGAGAGCGGACAAAGAAAAAACGGAGAAAATGCTGAACGAGAAACACGCAATACTGGACGCGAAGATGAAGGAGATGGAAGAGCGAGGTGAGATTCAGAAGAACCTCGAGATCGAGGTTGACCGGTTGTTCCGGTTGAAGGAACTCAAGTATCGCTGCATGGTTCGCGCAACAACTACATCACATTTTCTGTTCGATTCGTTTTTCAAGTTCGATTTCTCGATGCTGATATTTTTATTCATTGGAACAGAGAGTTTCTCCGATGAGAACGCTTAG

Predicted protein sequences of Glyma18g44540

Limit To All Plant Sequences

>Glyma18g44540.2   sequence type=predicted peptide   gene model=Glyma18g44540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTPTTGVPKRRPRSGRTPLQLKNTPADPIHPSAKPKPKPKPYFEISLIDKENNPVAAVAVLVAQPPETSLAEELSAVKKKLERMRADKEKTEKMLNEKHAILDAKMKEMEERGEIQKNLEIEVDRLFRLKELKYRCMRVSPMRTLREKEQGKIVNEAPSQSEVKTEETVASESESESESESVGGECQVLQSPGSACSQTHTPHTKSDS*

>Glyma18g44540.3   sequence type=predicted peptide   gene model=Glyma18g44540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTPTTGVPKRRPRSGRTPLQLKNTPADPIHPSAKPKPKPKPYFEISLIDKENNPVAAVAVLVAQPPETSLAEELSAVKKKLERMRADKEKTEKMLNEKHAILDAKMKEMEERGEIQKNLEIEVDRLFRLKELKYRCMVRATTTSHFLFDSFFKFDFSMLIFLFIGTESFSDENA*

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