Glyma18g44530 - SoyBase

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Report for Sequence Feature Glyma18g44530

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54242543
stop:	54248451
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38570	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits to 300 proteins in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). \| chr2:16136854-16138417 REVERSE LENGTH=328	SoyBase	E_val: 2.00E-76	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N378	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N378_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q10LV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10LV0_ORYSJ	SoyBase	E_val: 3.00E-83	ISS

Expression Patterns of Glyma18g44530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44530

Paralog	Evidence	Comments
Glyma09g41020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g212900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g44530

Limit To All Plant Sequences

>Glyma18g44530.3   sequence type=transcript   gene model=Glyma18g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGACTTGATTGTTTGTATGAAAGGTCAAATAATAATTTTCCACGTCCATTACCATTACTCAGCAGTTTTCTACTTTTCTTCTACACCCACTCCATACATTACTCAACTCATATCCGTTCTGCTTCAACACCGCACATCATTTTCTAATGCTGTAAAATTTGTACCATGCAGCAAGGGGCTCTGTTTCTGCTTTTGTGCGTGGTCTCTCTGTTCCCCCTCACTCACTATGCCTGACTTTCTTGCCACAAACCCCCTTACCATTTCAGCTGCAGAATCTCCAAGATTCCCCTTCCTCCATTCATGCCCAACTCTTACACCAAGACCCCAACTCAACCCGAATTTCCGTATCCCCTTTTCTCCCAAACCATCTAAAAACAAGAGCGTCTCTTTGGCACTGAGCTCCAGGTCGAATGAAGGGTCATCAAGGGGTTATGGCTTTTACAACGAGCTTGAGTTTGAGGACAGAAAGGACAAGACTTTTGGGTTGGAGATGAACCCTGTTGTTGGTGAAGATTCCCAGAGTGAAACTGGGTCAATCCCCTTTGATGGGGTGGAGGGTGGTGATGATAAGGGAGAGGATGATTTGGTTCGGGCTCAGGGGGATGCAGATGGGGATGGGGATGGTTTGAAGAAAGGTTATGATGATGAAGAAGGTGAGAATGAGAAATTTGGAGGTAAACTTAGAGTCAGAAGAGGTAAAGAGGTAATTAGAAGGTCGAATTTGTTGGCCAAGCAAGTGATCAGCATTCACTCTGCCCTTAGTTTGGGATTCGTCTCGCAGCTTTGGGTGGACACAAGCTCTTGGATGGTGTTATTTGTGGAGGTGAGGCCAAACTTGCTTTCTGGGGATTCAGAGAAATTCCTTCTGGATGATATTAGTCAGGTTGGAGATGTTGTCCTTGTCCAGGATGAAAGTGTGACAGACAATGAATTTAAAATGGTTGGCTTGGAGACACTGGTTGGATACAAAGTTGTAACACCCTCTCGACGGAATATTGGAAAGGTGCGTGGGTACACTTTCGGCATCAATTCAGGTGCTGTTGAAGAACTTGAACTTGATTCATTTGGACTATCCATCATTCCGTCAAGTTTGGTGAGTACCTACTCTTTGCTGGTTGAGGACGTGCTGGAAGTAGTATCTGACGCAGTTGTTGTGCATGAAGCTGCAGCTTTACGAATTCAAAGGCTTTCTAAGGTACCTTTAGTTCAAGAATAAAACTGCCACCAGGTTTTCTTGGTGATATACATCGCTTCTGTTTGTTAGCTGCTGAAATCGTTGCTTCTGAGATTCTACTGACTCTAAATCCAGATTACTTCTAGTTGTCTTGTTGGATACATAAATATACACTCATGCTTTTTATGGATAATGCATAGAAGCATACAATTCTGATAAATGCGTTCGATTTATCCTGCATATGGCATATTAATTATTAGGTTCATGCTTT

Coding sequences of Glyma18g44530

Limit To All Plant Sequences

>Glyma18g44530.2   sequence type=CDS   gene model=Glyma18g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGACTTGATTGTTTGTATGAAAGGTCAAATAATAATTTTCCACGTCCATTACCATTACTCAGCAGTTTTCTACTTTTCTTCTACACCCACTCCATACATTACTCAACTCATATCCGTTCTGCTTCAACACCGCACATCATTTTCTAATGCTGTAAAATTTGTACCATGCAGCAAGGGGCTCTGTTTCTGCTTTTGTGCGTGGTCTCTCTGTTCCCCCTCACTCACTATGCCTGACTTTCTTGCCACAAACCCCCTTACCATTTCAGCTGCAGAATCTCCAAGATTCCCCTTCCTCCATTCATGCCCAACTCTTACACCAAGACCCCAACTCAACCCGAATTTCCGTATCCCCTTTTCTCCCAAACCATCTAAAAACAAGAGCGTCTCTTTGGCACTGAGCTCCAGGTCGAATGAAGGGTCATCAAGGGGTTATGGCTTTTACAACGAGCTTGAGTTTGAGGACAGAAAGGACAAGACTTTTGGGTTGGAGATGAACCCTGTTGTTGGTGAAGATTCCCAGAGTGAAACTGGGTCAATCCCCTTTGATGGGGTGGAGGGTGGTGATGATAAGGGAGAGGATGATTTGGTTCGGGCTCAGGGGGATGCAGATGGGGATGGGGATGGTTTGAAGAAAGGTTATGATGATGAAGAAGGTGAGAATGAGAAATTTGGAGGTAAACTTAGAGTCAGAAGAGGTAAAGAGGTAATTAGAAGGTCGAATTTGTTGGCCAAGCAAGTGATCAGCATTCACTCTGCCCTTAGTTTGGGATTCGTCTCGCAGCTTTGGGTGGACACAAGCTCTTGGATGGTGTTATTTGTGGAGGTGAGGCCAAACTTGCTTTCTGGGGATTCAGAGAAATTCCTTCTGGATGATATTAGTCAGGTTGGAGATGTTGTCCTTGTCCAGGATGAAAGTGTGACAGACAATGAATTTAAAATGGTTGGCTTGGAGACACTGGTTGGATACAAAGTTGTAACACCCTCTCGACGGAATATTGGAAAGGTGCGTGGGTACACTTTCGGCATCAATTCAGGTGCTGTTGAAGAACTTGAACTTGATTCATTTGGACTATCCATCATTCCGTCAAGTTTGGTGAGTACCTACTCTTTGCTGGTTGAGGACGTGCTGGAAGTAGTATCTGACGCAGTTGTTGTGCATGAAGCTGCAGCTTTACGAATTCAAAGGCTTTCTAAGGGTTTTTTGGGCAATCAGAATGTGAGAGTTTCAGTGGATGATTTTGAAGATTTTGACTCTGAACAATCTGACACATACGGTCCTATTTCAAGGAGAAGAAAAAGTTTCGGAAGAAAGAAACCCAGTCATAGAGATTGGGATGATGAAGATAATTGGGAGCTTCCAATGGACTATCTCTGA

>Glyma18g44530.3   sequence type=CDS   gene model=Glyma18g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGACTTGATTGTTTGTATGAAAGGTCAAATAATAATTTTCCACGTCCATTACCATTACTCAGCAGTTTTCTACTTTTCTTCTACACCCACTCCATACATTACTCAACTCATATCCGTTCTGCTTCAACACCGCACATCATTTTCTAATGCTGTAAAATTTGTACCATGCAGCAAGGGGCTCTGTTTCTGCTTTTGTGCGTGGTCTCTCTGTTCCCCCTCACTCACTATGCCTGACTTTCTTGCCACAAACCCCCTTACCATTTCAGCTGCAGAATCTCCAAGATTCCCCTTCCTCCATTCATGCCCAACTCTTACACCAAGACCCCAACTCAACCCGAATTTCCGTATCCCCTTTTCTCCCAAACCATCTAAAAACAAGAGCGTCTCTTTGGCACTGAGCTCCAGGTCGAATGAAGGGTCATCAAGGGGTTATGGCTTTTACAACGAGCTTGAGTTTGAGGACAGAAAGGACAAGACTTTTGGGTTGGAGATGAACCCTGTTGTTGGTGAAGATTCCCAGAGTGAAACTGGGTCAATCCCCTTTGATGGGGTGGAGGGTGGTGATGATAAGGGAGAGGATGATTTGGTTCGGGCTCAGGGGGATGCAGATGGGGATGGGGATGGTTTGAAGAAAGGTTATGATGATGAAGAAGGTGAGAATGAGAAATTTGGAGGTAAACTTAGAGTCAGAAGAGGTAAAGAGGTAATTAGAAGGTCGAATTTGTTGGCCAAGCAAGTGATCAGCATTCACTCTGCCCTTAGTTTGGGATTCGTCTCGCAGCTTTGGGTGGACACAAGCTCTTGGATGGTGTTATTTGTGGAGGTGAGGCCAAACTTGCTTTCTGGGGATTCAGAGAAATTCCTTCTGGATGATATTAGTCAGGTTGGAGATGTTGTCCTTGTCCAGGATGAAAGTGTGACAGACAATGAATTTAAAATGGTTGGCTTGGAGACACTGGTTGGATACAAAGTTGTAACACCCTCTCGACGGAATATTGGAAAGGTGCGTGGGTACACTTTCGGCATCAATTCAGGTGCTGTTGAAGAACTTGAACTTGATTCATTTGGACTATCCATCATTCCGTCAAGTTTGGTGAGTACCTACTCTTTGCTGGTTGAGGACGTGCTGGAAGTAGTATCTGACGCAGTTGTTGTGCATGAAGCTGCAGCTTTACGAATTCAAAGGCTTTCTAAGGTACCTTTAGTTCAAGAATAA

Predicted protein sequences of Glyma18g44530

Limit To All Plant Sequences

>Glyma18g44530.2   sequence type=predicted peptide   gene model=Glyma18g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLIVCMKGQIIIFHVHYHYSAVFYFSSTPTPYITQLISVLLQHRTSFSNAVKFVPCSKGLCFCFCAWSLCSPSLTMPDFLATNPLTISAAESPRFPFLHSCPTLTPRPQLNPNFRIPFSPKPSKNKSVSLALSSRSNEGSSRGYGFYNELEFEDRKDKTFGLEMNPVVGEDSQSETGSIPFDGVEGGDDKGEDDLVRAQGDADGDGDGLKKGYDDEEGENEKFGGKLRVRRGKEVIRRSNLLAKQVISIHSALSLGFVSQLWVDTSSWMVLFVEVRPNLLSGDSEKFLLDDISQVGDVVLVQDESVTDNEFKMVGLETLVGYKVVTPSRRNIGKVRGYTFGINSGAVEELELDSFGLSIIPSSLVSTYSLLVEDVLEVVSDAVVVHEAAALRIQRLSKGFLGNQNVRVSVDDFEDFDSEQSDTYGPISRRRKSFGRKKPSHRDWDDEDNWELPMDYL*

>Glyma18g44530.3   sequence type=predicted peptide   gene model=Glyma18g44530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLIVCMKGQIIIFHVHYHYSAVFYFSSTPTPYITQLISVLLQHRTSFSNAVKFVPCSKGLCFCFCAWSLCSPSLTMPDFLATNPLTISAAESPRFPFLHSCPTLTPRPQLNPNFRIPFSPKPSKNKSVSLALSSRSNEGSSRGYGFYNELEFEDRKDKTFGLEMNPVVGEDSQSETGSIPFDGVEGGDDKGEDDLVRAQGDADGDGDGLKKGYDDEEGENEKFGGKLRVRRGKEVIRRSNLLAKQVISIHSALSLGFVSQLWVDTSSWMVLFVEVRPNLLSGDSEKFLLDDISQVGDVVLVQDESVTDNEFKMVGLETLVGYKVVTPSRRNIGKVRGYTFGINSGAVEELELDSFGLSIIPSSLVSTYSLLVEDVLEVVSDAVVVHEAAALRIQRLSKVPLVQE*

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