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Report for Sequence Feature Glyma18g44520

Feature Type:gene_model
Chromosome:Gm18
Start:54235132
stop:54239232
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g44520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08720AT Annotation by Michelle Graham. TAIR10: serine/threonine protein kinase 2 | chr3:2648625-2650407 REVERSE LENGTH=471 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0045727GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of translation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0598 KOG Ribosomal protein S6 kinase and related proteins JGI ISS
PTHR24354Panther SERINE/THREONINE-PROTEIN KINASE YPK-RELATED JGI ISS
PTHR24354:SF83Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00433PFAM Protein kinase C terminal domain JGI ISS
UniRef100_B9SRT9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein S6 kinase, putative n=1 Tax=Ricinus communis RepID=B9SRT9_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N377UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N377_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g44520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44520
ParalogEvidenceComments
Glyma09g41010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g212800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g44520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g44520
>Glyma18g44520.1   sequence type=CDS   gene model=Glyma18g44520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCCTCTCAGTTTTCTGCTTTTACTTTGGCTGGCTACAAACCGTCTCAGACTCAGTTACTCTTTCCTGCAAAGCTTGTTGATACTGTGAACACAGAGCATATTGAGCTGGATTTCTCTGATGTCTTTGGTCCTGTTACGTTAGATTTGAATAACATTGATTCCACTACCAGTGAGCCTATGGAAGAAGTGAACGAGCTGGTTTATGATGACCCACCAGTGATTTACACTCGCTCACATTCTCTGGTTGGCCCTTCAACTTGTGTTAGTCAATCACTTAAGCTTGGCAAACTCACCATACATGAGACTGAGGATTCATTGGAACTAGTGGAGCATGTCAATGGAGAGGCCATTAAAGACATCAAAGAATCTTCCTTTGTTGAGGAATCATTGAAAGATGAAGATGGGAATCTCATGAAGATCCACAGAGTTAGCATTGACGATTTCGAGATTTTGAAGGTTGTTGGGCAGGGTGCATTTGCAAAAGTTTATCAGGTGAGGAAAAAGGGTACTTCTGAAATATATGCTATGAAGGTTATGCGGAAGGACAAGATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGATATTTGGACAAAGATAGAACACCCATTTGTTGTTCAACTCAGATACTCTTTTCAGACAAAATACAGACTGTATCTTGTGCTGGATTTTGTAAATGGGGGCCATCTCTTTTTCCAGCTTTATCACCAAGGCCTTTTCAGAGAGGATCTAGCACGCATATATACAGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCATAGGGATCTAAAGCCTGAAAATATCCTACTGGATGCTGATGGCCATGTTATGTTGACTGATTTTGGCTTAGCTAAACAATTTGAAGAGAGTACAAGATCAAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAAGGCCATGATAAGGCTGCTGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGCCGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATTAAGCTGCCAGCATTTTTGTCAAGTGAAGCACATTCACTGTTGAAAGGGCTGCTACAGAAGGAACAAGCTAGGCGCTTAGGTTGTGGACCTCGGGGTGTTGAGGAAATTAAAAGCCACAAGTGGTTTAAACCAATCAATTGGAGAAAGTTGGAAGCAAGAGAAATCCAACCAAGCTTTAGGCCAGAAGTAGCTGGTGTGCACTGTGTTGCCAACTTTGAGAAGCGCTGGACTGATATGCCTGTTGTGGACTCACCAGCTGCCAGCCCAAATGGTGGAAACCCCTTTAAGGATTTCTCTTATGTGAGGCCTGCAGCCTCTTTTCTTCAAAGGAATAACCCTGCTTACTAG
Predicted protein sequences of Glyma18g44520
>Glyma18g44520.1   sequence type=predicted peptide   gene model=Glyma18g44520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSSQFSAFTLAGYKPSQTQLLFPAKLVDTVNTEHIELDFSDVFGPVTLDLNNIDSTTSEPMEEVNELVYDDPPVIYTRSHSLVGPSTCVSQSLKLGKLTIHETEDSLELVEHVNGEAIKDIKESSFVEESLKDEDGNLMKIHRVSIDDFEILKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHAEYMKAERDIWTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYTAEIVSAVSHLHANGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGVLLFEMLTGKPPFCGGNRDKIQQKIVKDKIKLPAFLSSEAHSLLKGLLQKEQARRLGCGPRGVEEIKSHKWFKPINWRKLEAREIQPSFRPEVAGVHCVANFEKRWTDMPVVDSPAASPNGGNPFKDFSYVRPAASFLQRNNPAY*






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